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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL HEM
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'HEM' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c hem.c -o hem.o
hem.c: In function 'onelayerhem':
hem.c:1390:12: warning: variable 'k' set but not used [-Wunused-but-set-variable]
  int i, j, k, m, n;
            ^
hem.c: In function 'chk_prt':
hem.c:1593:16: warning: variable 'l' set but not used [-Wunused-but-set-variable]
   int i, j, k, l;
                ^
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o HEM.dll tmp.def hem.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-HEM/00new/HEM/libs/x64
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'HEM'
    finding HTML links ... done
    am.tran                                 html  
    am.tran.half                            html  
    base.ASE.Olig                           html  
    base.PSE.Olig                           html  
    base.error.Olig                         html  
    base.error.Olig.quanOnly                html  
    boot.base.ASE.Olig                      html  
    boot.base.PSE.Olig                      html  
    boot.base.error.Olig                    html  
    fixbound.predict.smooth.spline          html  
    hem                                     html  
    hem.eb.prior                            html  
    hem.fdr                                 html  
    hem.null.no                             html  
    hem.null.one                            html  
    hem.null.two                            html  
    hem.preproc                             html  
    mubcp                                   html  
    nonpar.error.Olig                       html  
    nonpar.no.error.Olig                    html  
    nonpar.rep.error.Olig                   html  
    par.error.Olig                          html  
    par.no.error.Olig                       html  
    par.rep.error.Olig                      html  
    pbrain                                  html  
    permut                                  html  
    quant.norm                              html  
    quant.normal                            html  
    quant.normal2                           html  
    quant.normalize                         html  
    remove.sig.genes                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HEM)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'RTCA' is missing or broken
 done