############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL HEM ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'HEM' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c hem.c -o hem.o hem.c: In function 'onelayerhem': hem.c:1390:12: warning: variable 'k' set but not used [-Wunused-but-set-variable] int i, j, k, m, n; ^ hem.c: In function 'chk_prt': hem.c:1593:16: warning: variable 'l' set but not used [-Wunused-but-set-variable] int i, j, k, l; ^ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o HEM.dll tmp.def hem.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-HEM/00new/HEM/libs/x64 ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'HEM' finding HTML links ... done am.tran html am.tran.half html base.ASE.Olig html base.PSE.Olig html base.error.Olig html base.error.Olig.quanOnly html boot.base.ASE.Olig html boot.base.PSE.Olig html boot.base.error.Olig html fixbound.predict.smooth.spline html hem html hem.eb.prior html hem.fdr html hem.null.no html hem.null.one html hem.null.two html hem.preproc html mubcp html nonpar.error.Olig html nonpar.no.error.Olig html nonpar.rep.error.Olig html par.error.Olig html par.no.error.Olig html par.rep.error.Olig html pbrain html permut html quant.norm html quant.normal html quant.normal2 html quant.normalize html remove.sig.genes html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HEM) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'RTCA' is missing or broken done