############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GenomicFeatures.buildbin-libdir && mkdir GenomicFeatures.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=GenomicFeatures.buildbin-libdir GenomicFeatures_1.47.12.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'GenomicFeatures' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GenomicFeatures' finding HTML links ... done FeatureDb-class html finding level-2 HTML links ... done TxDb-class html as-format-methods html coordinate-mapping-methods html coverageByTranscript html disjointExons html exonicParts html extractTranscriptSeqs html extractUpstreamSeqs html features html getPromoterSeq-methods html id2name html makeFeatureDbFromUCSC html makeTxDb html makeTxDbFromBiomart html makeTxDbFromEnsembl html makeTxDbFromGFF html makeTxDbFromGRanges html makeTxDbFromUCSC html makeTxDbPackage html mapIdsToRanges html mapRangesToIds html microRNAs html nearest-methods html proteinToGenome html select-methods html transcriptLengths html transcriptLocs2refLocs html transcripts html transcriptsBy html transcriptsByOverlaps html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'GenomicFeatures' as GenomicFeatures_1.47.12.zip * DONE (GenomicFeatures)