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This page was generated on 2022-06-24 12:06:05 -0400 (Fri, 24 Jun 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4380
palomino3Windows Server 2022 Datacenterx644.2.0 (2022-04-22 ucrt) -- "Vigorous Calisthenics" 4156
merida1macOS 10.14.6 Mojavex86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4221
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for GOSemSim on palomino3


To the developers/maintainers of the GOSemSim package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GOSemSim.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 826/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GOSemSim 2.22.0  (landing page)
Guangchuang Yu
Snapshot Date: 2022-06-23 13:55:15 -0400 (Thu, 23 Jun 2022)
git_url: https://git.bioconductor.org/packages/GOSemSim
git_branch: RELEASE_3_15
git_last_commit: fd74aeb
git_last_commit_date: 2022-04-26 11:02:23 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: GOSemSim
Version: 2.22.0
Command: rm -rf GOSemSim.buildbin-libdir && mkdir GOSemSim.buildbin-libdir && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=GOSemSim.buildbin-libdir GOSemSim_2.22.0.tar.gz
StartedAt: 2022-06-24 06:44:13 -0400 (Fri, 24 Jun 2022)
EndedAt: 2022-06-24 06:44:59 -0400 (Fri, 24 Jun 2022)
EllapsedTime: 46.1 seconds
RetCode: 0
Status:   OK  
PackageFile: GOSemSim_2.22.0.zip
PackageFileSize: 1.192 MiB

Command output

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###
### Running command:
###
###   rm -rf GOSemSim.buildbin-libdir && mkdir GOSemSim.buildbin-libdir && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=GOSemSim.buildbin-libdir GOSemSim_2.22.0.tar.gz
###
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##############################################################################


* installing *source* package 'GOSemSim' ...
** using staged installation
** libs
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ICmethod.cpp -o ICmethod.o
ICmethod.cpp: In function 'Rcpp::NumericMatrix infoContentMethod_cpp(Rcpp::StringVector&, Rcpp::StringVector&, Rcpp::List&, Rcpp::NumericVector&, const string&, const string&)':
ICmethod.cpp:82:29: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
   82 |     for (std::size_t i=0; i < ic_.size(); i++ ) {
      |                           ~~^~~~~~~~~~~~
ICmethod.cpp:88:29: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
   88 |     for (std::size_t i=0; i < ic_.size(); i++ ) {
      |                           ~~^~~~~~~~~~~~
ICmethod.cpp:116:29: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
  116 |     for (std::size_t i=0; i < anc_.size(); i++ ) {
      |                           ~~^~~~~~~~~~~~~
ICmethod.cpp:129:30: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
  129 |   for ( std::size_t i = 0; i < id1_.size(); i++ ) {
      |                            ~~^~~~~~~~~~~~~
ICmethod.cpp:136:34: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
  136 |       for ( std::size_t j = 0; j < id2_.size(); j++ ) {
      |                                ~~^~~~~~~~~~~~~
ICmethod.cpp:163:34: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
  163 |       for ( std::size_t j = 0; j < id2_.size(); j++ ) {
      |                                ~~^~~~~~~~~~~~~
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -shared -s -static-libgcc -o GOSemSim.dll tmp.def ICmethod.o RcppExports.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.15-bioc/meat/GOSemSim.buildbin-libdir/00LOCK-GOSemSim/00new/GOSemSim/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'GOSemSim' as GOSemSim_2.22.0.zip
* DONE (GOSemSim)