############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GENESIS.buildbin-libdir && mkdir GENESIS.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=GENESIS.buildbin-libdir GENESIS_2.25.4.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'GENESIS' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c fht.c -o fht.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o GENESIS.dll tmp.def fht.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/meat/GENESIS.buildbin-libdir/00LOCK-GENESIS/00new/GENESIS/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GENESIS' finding HTML links ... done GENESIS-package html HapMap_ASW_MXL_KINGmat html admixMap html finding level-2 HTML links ... done assocTestAggregate html assocTestSingle html computeVSIF html defunct html effectAllele html fitNullModel html jointScoreTest html kin2gds html kingToMatrix html makeSparseMatrix html REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/meat/GENESIS.buildbin-libdir/00LOCK-GENESIS/00new/GENESIS/help/makeSparseMatrix+2CMatrix-method.html pcair html pcairPartition html pcrelate html pcrelateToMatrix html plot.pcair html print.pcair html sample_annotation_1KG html varCompCI html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'GENESIS' as GENESIS_2.25.4.zip * DONE (GENESIS)