############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL GAPGOM ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'GAPGOM' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GAPGOM' finding HTML links ... done ambiguous_functions html dag_funcs html dot-enrichment_analysis html dot-entrezraw_to_entrez html dot-ext_id_to_term_id html dot-fantom_filter_entrez html dot-generate_translation_df html dot-get_package_version html dot-go_ids_lookup html dot-organism_to_species_lib html dot-prepare_score_df html dot-prepare_score_matrix_topoicsim html dot-prepare_variables_topoicsim html dot-resolve_genes_unique_gos html dot-resolve_keys_col html dot-set_identical_items html dot-set_values html dot-term_id_to_ext_id html dot-topo_ic_sim_g1g2 html dot-topo_ic_sim_geneset html dot-topo_ic_sim_titj html dot-unique_combos html expression_prediction html expression_semantic_scoring html expset html fantom_download html fantom_load_raw html fantom_to_expset html geometrical_measures html glb_checks html id_translation_df html misc_functions html set_go_data html topo_ic_sim_genes html topo_ic_sim_term html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GAPGOM) Making 'packages.html' ... done