############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf EventPointer.buildbin-libdir && mkdir EventPointer.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=EventPointer.buildbin-libdir EventPointer_3.3.1.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'EventPointer' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c dgl.c -o dgl.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c params.c -o params.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c pgl.c -o pgl.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c qdgl.c -o qdgl.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c qgl.c -o qgl.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c rgl.c -o rgl.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o EventPointer.dll tmp.def dgl.o params.o pgl.o qdgl.o qgl.o rgl.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/meat/EventPointer.buildbin-libdir/00LOCK-EventPointer/00new/EventPointer/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'EventPointer' finding HTML links ... done AllEvents_RNASeq html AllEvents_RNASeq_MP html ArrayDatamultipath html ArraysData html CDFfromGTF html CDFfromGTF_Multipath html CreateExSmatrix html EventDetection html EventDetectionMultipath html EventDetection_transcriptome html EventPointer html EventPointer_Bootstraps html EventPointer_IGV html EventPointer_RNASeq html EventPointer_RNASeq_IGV html EventPointer_RNASeq_TranRef html EventPointer_RNASeq_TranRef_IGV html EventXtrans html FindPrimers html Fit html GetPSI_FromTranRef html InternalFunctions html MyPrimers html MyPrimers_taqman html PSI_Statistic html PSIss html PrepareBam_EP html Protein_Domain_Enrichment html ResulTable html SF_Prediction html SG_RNASeq html TxD html getbootstrapdata html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'EventPointer' as EventPointer_3.3.1.zip * DONE (EventPointer)