############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf DirichletMultinomial.buildbin-libdir && mkdir DirichletMultinomial.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DirichletMultinomial_1.38.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R DirichletMultinomial.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=DirichletMultinomial.buildbin-libdir DirichletMultinomial_1.38.0.tar.gz' >>>>>>> * installing *source* package ‘DirichletMultinomial’ ... ** using staged installation ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fPIC -Wall -g -O2 -c R_init_DirichletMultinomial.c -o R_init_DirichletMultinomial.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fPIC -Wall -g -O2 -c dirichlet_fit.c -o dirichlet_fit.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include `gsl-config --cflags` -DR_DIRICHLETMULTINOMIAL -fPIC -Wall -g -O2 -c dirichlet_fit_main.c -o dirichlet_fit_main.o clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DirichletMultinomial.so R_init_DirichletMultinomial.o dirichlet_fit.o dirichlet_fit_main.o -L/usr/local/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.15-bioc/meat/DirichletMultinomial.buildbin-libdir/00LOCK-DirichletMultinomial/00new/DirichletMultinomial/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DirichletMultinomial) >>>>>>> >>>>>>> FIXING LINKS FOR DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs/DirichletMultinomial.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs/DirichletMultinomial.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs/DirichletMultinomial.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs/DirichletMultinomial.so"