############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf DMCHMM.buildbin-libdir && mkdir DMCHMM.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=DMCHMM.buildbin-libdir DMCHMM_1.17.1.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'DMCHMM' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'DMCHMM' ** help *** installing help indices converting help for package 'DMCHMM' finding HTML links ... done BSDMCs-class html BSData-class html finding level-2 HTML links ... done DMCHMM-package html cBSDMCs-method html cBSData-method html combine-method html data html findDMCs-method html manhattanDMCs-method html methHMEM-method html methHMMCMC-method html methLevels-method html methReads-method html methStates-method html methVars-method html params html qqDMCs-method html readBismark-method html totalReads-method html writeBED-method html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'DMCHMM' ** testing if installed package can be loaded from final location Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'DMCHMM' ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'DMCHMM' as DMCHMM_1.17.1.zip * DONE (DMCHMM)