############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DEXSeq ### ############################################################################## ############################################################################## * checking for file ‘DEXSeq/DESCRIPTION’ ... OK * preparing ‘DEXSeq’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... OK * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories NB: this package now depends on R (>= 3.5.0) WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. 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‘DEXSeq/vignettes/DEXSeq_cache/html/buildExonCountSet2FindBAMs_4d024eb60ca186032a9844006547324f.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/buildExonCountSet3_d427e08a27fc8a94fcf8d27c59c34ab8.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/buildExonCountSet3_d427e08a27fc8a94fcf8d27c59c34ab8.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/buildExonCountSetDisjoin_b7f26b03b3fb7afa13bed97f813d96fd.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/buildExonCountSetDisjoin_b7f26b03b3fb7afa13bed97f813d96fd.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/buildExonCountSetDownloadAnno_b75367c7fe90529cfb51eb7230691ce2.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/buildExonCountSetDownloadAnno_b75367c7fe90529cfb51eb7230691ce2.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/buildExonCountSetLoadPacks_e75cec772d349fb01a5774ca86e33e36.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/buildExonCountSetLoadPacks_e75cec772d349fb01a5774ca86e33e36.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/checkClaim_0a27f3be0dca03130f3a4dc02e537196.RData’ 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‘DEXSeq/vignettes/DEXSeq_cache/html/formulas2_66591c3deb9e0bf1d7e6c77e22d94a96.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/formulas2_66591c3deb9e0bf1d7e6c77e22d94a96.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/grmethods_b07569e73227f189623cc5c9b8fa7c4b.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/grmethods_b07569e73227f189623cc5c9b8fa7c4b.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/loadDEXSeq_d9b8ca213eb310560cfcdede734eb527.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/loadDEXSeq_d9b8ca213eb310560cfcdede734eb527.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/para1_89dbb3ade805e28cc906422fb7166a88.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/para1_89dbb3ade805e28cc906422fb7166a88.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/pergeneqval_79f551a2adfcf5f78eac947e884dd43b.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/pergeneqval_79f551a2adfcf5f78eac947e884dd43b.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/plot1_3963d560a8bd84f6cdca9b188a81521d.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/plot1_3963d560a8bd84f6cdca9b188a81521d.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/plot2_5f19666340ed333a3667bb2e721a9876.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/plot2_5f19666340ed333a3667bb2e721a9876.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/plot3_2e90406bcba9aa097d22fa5ef36417d2.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/plot3_2e90406bcba9aa097d22fa5ef36417d2.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/plot4_eb6c5fde25d8949f4615b24bbe49297e.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/plot4_eb6c5fde25d8949f4615b24bbe49297e.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/res_again_c2cff9fe118e282b648e531fde4aa71d.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/res_again_c2cff9fe118e282b648e531fde4aa71d.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/results1_2eb20f72babee7f70b2e78b43480b26b.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/results1_2eb20f72babee7f70b2e78b43480b26b.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/results2_812d1d26d7add4c0c4b001fa003eaa89.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/results2_812d1d26d7add4c0c4b001fa003eaa89.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/sampleTable_58dfdf396491ffa550c8bb17328c3b95.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/sampleTable_58dfdf396491ffa550c8bb17328c3b95.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/sessionInfo_6c29e58c2b3e78a369815a7ecc6f9a86.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/sessionInfo_6c29e58c2b3e78a369815a7ecc6f9a86.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/startVignette_06602cd683e55cb42c4fa1de2fb44cd9.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/startVignette_06602cd683e55cb42c4fa1de2fb44cd9.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/systemFile_7d82a3081b671b0f9f4241a382b57fd1.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/systemFile_7d82a3081b671b0f9f4241a382b57fd1.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/table2_b1ec9ee4b4ba4fe7f6d497fd05428098.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/table2_b1ec9ee4b4ba4fe7f6d497fd05428098.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/table3_699eaf049060db5f0031482fd6dbb956.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/table3_699eaf049060db5f0031482fd6dbb956.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/tallyExons_96a9f8ffb7ae0725e325018a148696bc.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/tallyExons_96a9f8ffb7ae0725e325018a148696bc.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/tallyGenes_f48208b80a9b3c703e1dbaa4406cf4c4.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/tallyGenes_f48208b80a9b3c703e1dbaa4406cf4c4.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/testForDEU1_1a3efeda2856e145a017116503a174af.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/testForDEU1_1a3efeda2856e145a017116503a174af.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/test_again_fb8694766ac129f7bc3515c860594c55.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/test_again_fb8694766ac129f7bc3515c860594c55.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/unnamed-chunk-10_a990fa7cec90d174b59ce953917110b8.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/unnamed-chunk-10_a990fa7cec90d174b59ce953917110b8.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/unnamed-chunk-2_55afdb1888a0c1bff60a9e1794a17073.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/unnamed-chunk-2_55afdb1888a0c1bff60a9e1794a17073.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/unnamed-chunk-3_3b82d970fd3854b492b1bce5b1ba1d36.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/unnamed-chunk-3_3b82d970fd3854b492b1bce5b1ba1d36.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/unnamed-chunk-4_aeb83c63769772345f14e8ab23053e81.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/unnamed-chunk-4_aeb83c63769772345f14e8ab23053e81.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/unnamed-chunk-5_13fce165bd81b87167998920fa3cd0ee.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/unnamed-chunk-5_13fce165bd81b87167998920fa3cd0ee.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/unnamed-chunk-6_0edcdf4cb3f42395aa647bc3ee0634eb.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/unnamed-chunk-6_0edcdf4cb3f42395aa647bc3ee0634eb.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/unnamed-chunk-7_4a27237e897622a911e59946cec643de.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/unnamed-chunk-7_4a27237e897622a911e59946cec643de.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/unnamed-chunk-8_6b1fb64f885bae0c12575fa0279d1262.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/unnamed-chunk-8_6b1fb64f885bae0c12575fa0279d1262.rdx’ ‘DEXSeq/vignettes/DEXSeq_cache/html/unnamed-chunk-9_6402346465b5cffe67d775cbcbe3bb4c.RData’ ‘DEXSeq/vignettes/DEXSeq_cache/html/unnamed-chunk-9_6402346465b5cffe67d775cbcbe3bb4c.rdx’ * building ‘DEXSeq_1.42.0.tar.gz’ Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: ‘DEXSeq/vignettes/DEXSeq_cache/html/buildExonCountSet2FindBAMs2_4b49fbfbdb6be189c81e955b20383f0c.RData’ Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: ‘DEXSeq/vignettes/DEXSeq_cache/html/buildExonCountSetDownloadAnno_b75367c7fe90529cfb51eb7230691ce2.RData’ Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: ‘DEXSeq/vignettes/DEXSeq_cache/html/buildExonCountSetDownloadAnno_b75367c7fe90529cfb51eb7230691ce2.rdb’ Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L, : storing paths of more than 100 bytes is not portable: ‘DEXSeq/vignettes/DEXSeq_cache/html/buildExonCountSetDownloadAnno_b75367c7fe90529cfb51eb7230691ce2.rdx’