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This page was generated on 2022-03-18 11:07:22 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for DESeq2 on riesling1


To the developers/maintainers of the DESeq2 package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DESeq2.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 500/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DESeq2 1.35.0  (landing page)
Michael Love
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/DESeq2
git_branch: master
git_last_commit: f722b14
git_last_commit_date: 2021-10-26 12:06:54 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: DESeq2
Version: 1.35.0
Command: rm -rf DESeq2.buildbin-libdir && mkdir DESeq2.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=DESeq2.buildbin-libdir DESeq2_1.35.0.tar.gz
StartedAt: 2022-03-17 21:04:42 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 21:05:49 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 67.0 seconds
RetCode: 0
Status:   OK  
PackageFile: DESeq2_1.35.0.zip
PackageFileSize: 2.389 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf DESeq2.buildbin-libdir && mkdir DESeq2.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=DESeq2.buildbin-libdir DESeq2_1.35.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'DESeq2' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c DESeq2.cpp -o DESeq2.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c RcppExports.cpp -o RcppExports.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o DESeq2.dll tmp.def DESeq2.o RcppExports.o -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lRlapack -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/DESeq2.buildbin-libdir/00LOCK-DESeq2/00new/DESeq2/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DESeq2'
    finding HTML links ... done
    DESeq                                   html  
    finding level-2 HTML links ... done

    DESeq2-package                          html  
    DESeqDataSet                            html  
    DESeqResults                            html  
    DESeqTransform                          html  
    coef                                    html  
    collapseReplicates                      html  
    counts                                  html  
    design                                  html  
    dispersionFunction                      html  
    dispersions                             html  
    estimateBetaPriorVar                    html  
    estimateDispersions                     html  
    estimateDispersionsGeneEst              html  
    estimateSizeFactors                     html  
    estimateSizeFactorsForMatrix            html  
    fpkm                                    html  
    fpm                                     html  
    integrateWithSingleCell                 html  
    lfcShrink                               html  
    makeExampleDESeqDataSet                 html  
    nbinomLRT                               html  
    nbinomWaldTest                          html  
    normTransform                           html  
    normalizationFactors                    html  
    normalizeGeneLength                     html  
    plotCounts                              html  
    plotDispEsts                            html  
    plotMA                                  html  
    plotPCA                                 html  
    plotSparsity                            html  
    priorInfo                               html  
    replaceOutliers                         html  
    results                                 html  
    rlog                                    html  
    show                                    html  
    sizeFactors                             html  
    summary                                 html  
    unmix                                   html  
    varianceStabilizingTransformation       html  
    vst                                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'DESeq2' as DESeq2_1.35.0.zip
* DONE (DESeq2)