############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r CountClust -R && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CountClust ### ############################################################################## ############################################################################## * checking for file 'CountClust/DESCRIPTION' ... OK * preparing 'CountClust': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'count-clust.Rmd' using rmarkdown Loading required package: usethis Downloading GitHub repo TaddyLab/maptpx@HEAD Installing package into 'F:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpY7IbOJ/Rinst28dc2a0032bd' (as 'lib' is unspecified) * installing *source* package 'maptpx' ... ** using staged installation ** libs gcc -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -DRPRINT -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o gcc -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -DRPRINT -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c latools.c -o latools.o gcc -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -DRPRINT -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rhelp.c -o rhelp.o gcc -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -DRPRINT -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c topics.c -o topics.o gcc -shared -s -static-libgcc -o maptpx.dll tmp.def init.o latools.o rhelp.o topics.o -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpY7IbOJ/Rinst28dc2a0032bd/00LOCK-maptpx/00new/maptpx/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maptpx) Loading required package: ggplot2 Warning: Package 'CountClust' is deprecated and will be removed from Bioconductor version 3.16 Warning in download.file("https://cdn.rawgit.com/kkdey/GTExV6Brain/master/data/GTExV6Brain.rda", : downloaded length 0 != reported length 49 Warning in download.file("https://cdn.rawgit.com/kkdey/GTExV6Brain/master/data/GTExV6Brain.rda", : cannot open URL 'https://cdn.jsdelivr.net/gh/kkdey/GTExV6Brain@master/data/GTExV6Brain.rda': HTTP status was '403 Forbidden' Quitting from lines 118-130 (count-clust.Rmd) Error: processing vignette 'count-clust.Rmd' failed with diagnostics: cannot open URL 'https://cdn.rawgit.com/kkdey/GTExV6Brain/master/data/GTExV6Brain.rda' --- failed re-building 'count-clust.Rmd' SUMMARY: processing the following file failed: 'count-clust.Rmd' Error: Vignette re-building failed. Execution halted