############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL CoreGx ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'CoreGx' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB Creating a generic function for 'colnames' from package 'base' in package 'CoreGx' Creating a generic function for 'rownames' from package 'base' in package 'CoreGx' ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'CoreGx' finding HTML links ... done CoreSet-accessors html CoreSet-class html CoreSet-utils html CoreSet html CoreSet2 html Create html DataMapper-accessors html DataMapper-class html LongTable-accessors html LongTable-class html LongTable html LongTableDataMapper-accessors html REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-CoreGx/00new/CoreGx/help/assayMap+2CLongTableDataMapper+2CList-method.html LongTableDataMapper-class html LongTableDataMapper html TREDataMapper-class html TREDataMapper html TreatmentResponseExperiment-class html TreatmentResponseExperiment html amcc html as html as.long.table html assayCols html buildLongTable html callingWaterfall html cash-LongTable-method html cash-set-LongTable-method html checkColumnCardinality html checkCsetStructure html clevelandSmall_cSet html colIDs html colMeta html connectivityScore html cosinePerm html dot- html dot-assayToBumpyMatrix html dot-convertCSetMolecularProfilesToSE html dot-distancePointLine html dot-distancePointSegment html dot-intersectList html dot-longTableToSummarizedExperiment html dot-sensitivityToLongTable html dot-symSetDiffList html dot-unionList html drugSensitivitySig html exampleDataMapper html getIntern html guessMapping-LongTableDataMapper-method html guessMapping html gwc html idCols-LongTable-method html idCols html is.items html lapply-MultiAssayExperiment-method html list_or_LongTable-class html mcc html merckLongTable html metaConstruct html metadata-LongTable-method html metadata-set-LongTable-method html reindex-LongTable-method html reindex html rowIDs html rowMeta html sensitivityInfo-set html sensitivityInfo html sensitivityMeasures-set html sensitivityMeasures html sensitivityProfiles-set html sensitivityProfiles html sensitivityRaw-set html sensitivityRaw html sensitivitySlotToLongTable html show-CoreSet-method html show-LongTable-method html showSigAnnot html sub-LongTable-ANY-ANY-ANY-method html sub-subset-LongTable-ANY-ANY-method html subset-LongTable-method html subsetTo html summarizeMolecularProfiles html summarizeSensitivityProfiles html updateCellId html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CoreGx) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'LiquidAssociation' is missing or broken done