############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL CopyNumberPlots ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'CopyNumberPlots' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'CopyNumberPlots' finding HTML links ... done EnsemblStyle html UCSCStyle html Ztree2Hclust html colByCopyNumber html computeHclustPlotOrder html getBAFColumn html getChrColumn html getColumn html getCopyNumberColors html getCopyNumberColumn html getEndColumn html getIDColumn html getLOHColumn html getLRRColumn html getPosColumn html getSegmentValueColumn html getStartColumn html loadCopyNumberCalls html loadCopyNumberCallsCNVkit html loadCopyNumberCallsCnmops html loadCopyNumberCallsDECoN html loadCopyNumberCallsDNAcopy html loadCopyNumberCallsPanelcnmops html loadCopyNumberCallsSeg html loadCopyNumberCallspennCNV html loadSNPData html loadSNPDataDNAcopy html loadSNPDataFromVCF html plotBAF html finding level-2 HTML links ... done plotCopyNumberCalls html plotCopyNumberCallsAsLines html plotCopyNumberSummary html plotLRR html plotSingleCellCopyNumberCalls html plotSingleCellCopyNumberSummary html prepareLabels html readHDF5Ztree html removeNAs html transformChr html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CopyNumberPlots) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'multicrispr' is missing or broken Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'RNAmodR' is missing or broken done