############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL ClassifyR ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'ClassifyR' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ClassifyR' finding HTML links ... done BiocParallelParamOrMissing html ClassifyResult-class html finding level-2 HTML links ... done CrossValParams-class html DLDAinterface html DMDranking html DataFrameOrNULL html FeatureSetCollection-class html FeatureSetCollectionOrNULL-class html HuRIdataset html KolmogorovSmirnovRanking html KullbackLeiblerRanking html MixModelsListsSet-class html ModellingParams-class html NSCfeatures html NSCpredictInterface html NSCtrainInterface html PredictParams-class html PredictParamsOrNULL html ROCplot html SVMinterface html SelectParams-class html SelectParamsOrNULL html StageParams html StageParamsOrMissing html StageParamsOrMissingOrNULL html TrainParams-class html TransformParams-class html TransformParamsOrNULL html asthmaDataset html bartlettRanking html calcPerformance html characterOrDataFrame-class html characterOrMissing html classifyInterface html differentMeansRanking html distribution html dlda-class html edgeRranking html edgesToHubNetworks html elasticNetFeatures html elasticNetGLMinterface html featureSetSummary html fisherDiscriminant html forestFeatures html functionOrList-class html functionOrNULL-class html getLocationsAndScales html interactorDifferences html kTSPclassifier html knnInterface html leveneRanking html likelihoodRatioRanking html limmaRanking html listOrNULL-class html mixmodels html multnet-class html naiveBayesKernel html numericOrMissing html numericOrNULL html pairsDifferencesRanking html pamrtrained-class html performancePlot html plotFeatureClasses html previousSelection html previousTrained html quickClassify html randomForest-class html randomForestInterface html rankingPlot html runTest html runTests html samplesMetricMap html selectionPlot html subtractFromLocation html svm-class html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ClassifyR) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'slalom' is missing or broken done