############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL ChIPseqR ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'ChIPseqR' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c startScore.c -o startScore.o startScore.c: In function '_ratioStat_pois': startScore.c:66:15: warning: unused variable 'tmp_stat' [-Wunused-variable] double stat, tmp_stat; ^~~~~~~~ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o ChIPseqR.dll tmp.def startScore.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-ChIPseqR/00new/ChIPseqR/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ChIPseqR' finding HTML links ... done BindScore html ChIPseqR-package html RLEBindScore-class html finding level-2 HTML links ... done RLEReadCounts-class html ReadCounts html accessors html alignFeature html callBindingSites html compress-BindScore html compress-ReadCounts html compress-methods html decompress-methods html decompress html exportBindSequence html getBindCor html getBindLen html getCutoff html internal html pickPeak html plot-BindScore html plot-ReadCounts html plotReads html plotWindow html pos2gff html simpleNucCall html startScore html strandPileup html windowCounts html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ChIPseqR) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'rWikiPathways' is missing or broken done