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###
### Running command:
###
###   rm -rf CellTrails.buildbin-libdir && mkdir CellTrails.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=CellTrails.buildbin-libdir CellTrails_1.13.1.tar.gz
###
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* installing *source* package 'CellTrails' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CellTrails'
    finding HTML links ... done
    addTrail                                html  
    connectStates                           html  
    contrastTrailExpr                       html  
    dot-adjustLayoutByPtime                 html  
    dot-bhtsne                              html  
    dot-capitalize                          html  
    dot-color_hue                           html  
    dot-color_ramp                          html  
    dot-connectStates_def                   html  
    dot-connect_ordi                        html  
    dot-connect_ortho                       html  
    dot-contrastExprTrail_def               html  
    dot-deleteMedianCentres                 html  
    dot-denoiseExpression                   html  
    dot-diffExpr                            html  
    dot-diffExprState_def                   html  
    dot-embedSamples_def                    html  
    dot-exprs                               html  
    dot-featureNameExists                   html  
    dot-filterTrajFeaturesByCOV_def         html  
    dot-filterTrajFeaturesByDL_def          html  
    dot-filterTrajFeaturesByFF_def          html  
    dot-findSpectrum_def                    html  
    dot-findStates_def                      html  
    dot-fitDynamic_def                      html  
    dot-fitTrajectory_def                   html  
    dot-fit_surface                         html  
    dot-fr_layout                           html  
    dot-generate_ordination                 html  
    dot-ihs                                 html  
    dot-linear_fit                          html  
    dot-needsToBeExpanded                   html  
    dot-nn_impute                           html  
    dot-pca_def                             html  
    dot-pheno                               html  
    dot-phenoNameExists                     html  
    dot-plotDynamic                         html  
    dot-plotManifold_def                    html  
    dot-plotSpectrum_def                    html  
    dot-plotStateExpression_def             html  
    dot-plotStateSize_def                   html  
    dot-plotStateTrajectory_def             html  
    dot-plotTrail_def                       html  
    dot-plotTrailblazing_def                html  
    dot-plot_trajectoryFit                  html  
    dot-prettyColorRamp                     html  
    dot-prettyString                        html  
    dot-project_ortho                       html  
    dot-rbf                                 html  
    dot-rescale                             html  
    dot-sampleNameExists                    html  
    dot-spanForest-set                      html  
    dot-spanForest                          html  
    dot-spatmed                             html  
    dot-stateTrajLayout                     html  
    dot-trailNameExists                     html  
    dot-trajGraph-set                       html  
    dot-trajGraph                           html  
    dot-trajLandmark-set                    html  
    dot-trajLandmark                        html  
    dot-trajResiduals-set                   html  
    dot-useFeature-set                      html  
    dot-useFeature                          html  
    dot-useSample-set                       html  
    dot-useSample                           html  
    dot-validatePlotParams                  html  
    dot-write_ygraphml_def                  html  
    embedSamples                            html  
    enrichment.test                         html  
    exSCE                                   html  
    featureNames-SingleCellExperiment-method
                                            html  
    filterTrajFeaturesByCOV                 html  
    filterTrajFeaturesByDL                  html  
    filterTrajFeaturesByFF                  html  
    findSpectrum                            html  
    findStates                              html  
    fitDynamic                              html  
    fitTrajectory                           html  
    landmarks                               html  
    latentSpace-set                         html  
    latentSpace                             html  
    manifold2D-set                          html  
    manifold2D                              html  
    pca                                     html  
    phenoNames                              html  
    plotDynamic                             html  
    plotManifold                            html  
    plotMap                                 html  
    plotStateExpression                     html  
    plotStateSize                           html  
    plotStateTrajectory                     html  
    plotTrail                               html  
    plotTrajectoryFit                       html  
    read.ygraphml                           html  
    removeTrail                             html  
    sampleNames-SingleCellExperiment-method
                                            html  
    selectTrajectory                        html  
    showTrajInfo                            html  
    simulate_exprs                          html  
    stateTrajLayout-set                     html  
    states-set                              html  
    states                                  html  
    trailNames-set                          html  
    trailNames                              html  
    trails                                  html  
    trajComponents                          html  
    trajFeatureNames-set                    html  
    trajFeatureNames                        html  
    trajLayout-set                          html  
    trajLayout                              html  
    trajResiduals                           html  
    trajSampleNames                         html  
    userLandmarks-set                       html  
    userLandmarks                           html  
    write.ygraphml                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'CellTrails' as CellTrails_1.13.1.zip
* DONE (CellTrails)