############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL CNVPanelizer ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'CNVPanelizer' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'CNVPanelizer' finding HTML links ... done Background html BedToGenomicRanges html BootList html CNVPanelizer-package html CNVPanelizerFromReadCounts html CNVPanelizerFromReadCountsHelper html CollectColumnFromAllReportTables html CombinedNormalizedCounts html IndexMultipleBams html NormalizedCounts html PlotBootstrapDistributions html ReadCountsFromBam html ReadXLSXToList html ReportTables html RunCNVPanelizerShiny html SelectReferenceSetByInterquartileRange html SelectReferenceSetByKmeans html SelectReferenceSetByPercentil html SelectReferenceSetFromReadCounts html StatusHeatmap html WriteListToXLSX html referenceReadCounts html sampleReadCounts html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CNVPanelizer) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'QuartPAC' is missing or broken done