############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r CNORode -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CNORode ### ############################################################################## ############################################################################## * checking for file 'CNORode/DESCRIPTION' ... OK * preparing 'CNORode': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'CNORode-vignette.Rnw' using Sweave Loading required package: CellNOptR Loading required package: RBGL Loading required package: graph Loading required package: BiocGenerics Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min Loading required package: hash hash-2.2.6.1 provided by Decision Patterns Loading required package: RCurl Loading required package: Rgraphviz Loading required package: grid Loading required package: XML Attaching package: ‘XML’ The following object is masked from ‘package:graph’: addNode Loading required package: ggplot2 Loading required package: genalg Attaching package: ‘CNORode’ The following object is masked from ‘package:stats’: simulate Error: processing vignette 'CNORode-vignette.Rnw' failed with diagnostics: chunk 8 (label = plotModelSim) Error in CNOlist(cnolist) : Input data must be a filename or the output of CellNOptR::makeCNOlist function --- failed re-building ‘CNORode-vignette.Rnw’ SUMMARY: processing the following file failed: ‘CNORode-vignette.Rnw’ Error: Vignette re-building failed. Execution halted