############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL CAGEfightR ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'CAGEfightR' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'CAGEfightR' finding HTML links ... done assignGeneID html assignMissingID html assignTxID html assignTxType html balanceBC html balanceD html bwCommonGenome html bwGenomeCompatibility html bwValid html calcBidirectionality html calcComposition html calcPooled html calcShape html calcSupport html calcTPM html calcTotalTags html checkCTSSs html checkPeaked html checkPooled html clusterBidirectionally html clusterUnidirectionally html combineClusters html convertBAM2BigWig html convertBED2BigWig html convertGRanges2GPos html exampleDesign html findLinks html findStretches html quantifyCTSSs html quantifyCTSSs2 html quantifyClusters html quantifyGenes html quickEnhancers html quickGenes html quickTSSs html shapeEntropy html shapeIQR html shapeMean html shapeMultimodality html subsetByBidirectionality html subsetByComposition html subsetBySupport html swapRanges html swapScores html trackBalance html trackCTSS html trackClusters html trackLinks html trimToPeak html trimToPercentiles html tuneTagClustering html utilsAggregateRows html utilsDeStrand html utilsScoreOverlaps html utilsSimplifyTxDb html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CAGEfightR) Making 'packages.html' ... done