##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL BubbleTree
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'BubbleTree' ...
** using staged installation
It is recommended to use 'given' instead of 'middle'.
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BubbleTree'
    finding HTML links ... done
    Annotate                                html  
    BTreePlotter                            html  
    BTreePredictor                          html  
    RBD                                     html  
    RscoreTrack                             html  
    TrackPlotter                            html  
    all.somatic.lst                         html  
    allCNV.lst                              html  
    allCall.lst                             html  
    allHetero.lst                           html  
    allRBD.lst                              html  
    annoByGenesAndCyto                      html  
    bafTrack                                html  
    btcompare                               html  
    btpredict                               html  
    cancer.genes.minus2                     html  
    centromere.dat                          html  
    cnv.gr                                  html  
    cyto.gr                                 html  
    drawBTree                               html  
    drawBubbles                             html  
    drawFeatures                            html  
    gene.uni.clean.gr                       html  
    getTracks                               html  
    heteroLociTrack                         html  
    hg19.seqinfo                            html  
    info                                    html  
    loadRBD                                 html  
    makeRBD                                 html  
    mergeSnpCnv                             html  
    saveXLS                                 html  
    snp.gr                                  html  
    trackBTree                              html  
    vol.genes                               html  
    xyTrack                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BubbleTree)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'pcaExplorer' is missing or broken
 done