############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL BiocOncoTK ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'BiocOncoTK' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'GenomicRanges::subtract' by 'magrittr::subtract' when loading 'BiocOncoTK' ** help *** installing help indices converting help for package 'BiocOncoTK' finding HTML links ... done CCLE_DRUG_BROAD html MSIsensor.10k html TcgaMutCounts html TcgaNIndWithAnyMut html add_sym html annotTabs html bindMSI html bipg_tests html brcaMAE html buildPancanSE html cell_70138 html clueDemos html clueServiceNames html darmGBMcls html dingMSI html featIDMapper html fireMSI html get_plates html ggFeatDens html ggFeatureSegs html ggMutDens html icd10_c html k23sig html kang_DNArepair html loadPatel html log10pl1 html map_tcga_ncit html mc3toGR html molpo_3utr html molpo_5utr html molpo_CDS html molpo_WGS html multiviz html oncoPrintISB html pancan.clin.varnames html pancan_BQ html finding level-2 HTML links ... done pancan_app html pancan_clinicalTabVarnames html pancan_longname html pancan_sampTypeMap html pancan_tabulate html patient_to_tumor_code html pertClasses html pert_70138 html query_clue html reexports html replaceRownames html small_msi html tumNorSet html utils html viz_msi_raw html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'GenomicRanges::subtract' by 'magrittr::subtract' when loading 'BiocOncoTK' ** testing if installed package can be loaded from final location Warning: replacing previous import 'GenomicRanges::subtract' by 'magrittr::subtract' when loading 'BiocOncoTK' ** testing if installed package keeps a record of temporary installation path * DONE (BiocOncoTK) Making 'packages.html' ... done