############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf BayesSpace.buildbin-libdir && mkdir BayesSpace.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=BayesSpace.buildbin-libdir BayesSpace_1.5.1.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'BayesSpace' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppDist/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppProgress/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppDist/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppProgress/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c cluster.cpp -o cluster.o C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o BayesSpace.dll tmp.def RcppExports.o cluster.o -fopenmp -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lRlapack -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/meat/BayesSpace.buildbin-libdir/00LOCK-BayesSpace/00new/BayesSpace/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'BayesSpace' finding HTML links ... done BayesSpace html Mode html cluster html clusterPlot html deconvolve html dot-adjust_hex_centers html dot-bsData html dot-clean_chain html dot-compute_interspot_distances html dot-find_neighbors html dot-flatten_matrix_list html dot-infer_param_dims html dot-init_cluster html dot-make_hex_spots html dot-make_index_names html dot-make_spot_vertices html dot-make_square_spots html dot-make_subspot_coldata html dot-make_subspot_offsets html dot-make_triangle_subspots html dot-make_vertices html dot-prepare_inputs html dot-read_chain html dot-select_spot_positions html dot-select_subspot_positions html enhanceFeatures html exampleSCE html featurePlot html find_neighbors html getRDS html mcmcChain html qTune html readVisium html spatialCluster html spatialEnhance html spatialPlot html spatialPreprocess html finding level-2 HTML links ... done ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'BayesSpace' as BayesSpace_1.5.1.zip * DONE (BayesSpace)