############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL Basic4Cseq ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'Basic4Cseq' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Basic4Cseq' finding HTML links ... done Data4Cseq-class html Data4Cseq html checkRestrictionEnzymeSequence html chooseNearCisFragments html createVirtualFragmentLibrary html drawDigestionFragmentHistogram html drawHeatmap html exportVisualizationFragmentData html getReadDistribution html giveEnzymeSequence html importVisualizationFragmentData html liverData html liverDataRaw html normalizeFragmentData html plotTransInteractions html prepare4CseqData html printBEDFragmentLibrary html printWigFile html readPointsOfInterestFile html readsToFragments html simulateDigestion html visualizeViewpoint html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Basic4Cseq) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'DegNorm' is missing or broken Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'sitadela' is missing or broken done