############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf BUScorrect.buildbin-libdir && mkdir BUScorrect.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=BUScorrect.buildbin-libdir BUScorrect_1.13.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'BUScorrect' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c BUS_Cfunctions.c -o BUS_Cfunctions.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o BUScorrect.dll tmp.def BUS_Cfunctions.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/meat/BUScorrect.buildbin-libdir/00LOCK-BUScorrect/00new/BUScorrect/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'BUScorrect' finding HTML links ... done BIC_BUS html BUScorrect-package html BUSexample_data html BUSgibbs html IG_index html Subtypes html adjusted_values html baseline_expression_values html calculate_EPSR_gamma html calculate_EPSR_mu html calculate_EPSR_sigma_sq html estimate_IG_indicators html location_batch_effects html postprob_DE html postprob_DE_thr_fun html print.BUSfits html scale_batch_effects html subtype_effects html summary.BUSfits html visualize_data html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'BUScorrect' as BUScorrect_1.13.0.zip * DONE (BUScorrect)