############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL BRGenomics ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'BRGenomics' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'BRGenomics' finding HTML links ... done BRGenomics-package html PROseq-data html applyNFsGRanges html binNDimensions html bootstrap-signal-by-position html genebodies html getCountsByPositions html getCountsByRegions html getDESeqDataSet html getDESeqResults html getMaxPositionsBySignal html getPausingIndices html getSpikeInCounts html getSpikeInNFs html getStrandedCoverage html import-functions html import_bam html intersectByGene html makeGRangesBRG html mergeGRangesData html mergeReplicates html subsampleBySpikeIn html subsampleGRanges html subsetRegionsBySignal html tidyChromosomes html txs_dm6_chr4 html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BRGenomics) Making 'packages.html' ... done