############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf BRGenomics.buildbin-libdir && mkdir BRGenomics.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=BRGenomics.buildbin-libdir BRGenomics_1.7.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'BRGenomics' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'BRGenomics' finding HTML links ... done BRGenomics-package html PROseq-data html applyNFsGRanges html binNDimensions html bootstrap-signal-by-position html genebodies html getCountsByPositions html getCountsByRegions html getDESeqDataSet html getDESeqResults html getMaxPositionsBySignal html getPausingIndices html getSpikeInCounts html getSpikeInNFs html getStrandedCoverage html import-functions html import_bam html intersectByGene html makeGRangesBRG html mergeGRangesData html mergeReplicates html subsampleBySpikeIn html subsampleGRanges html subsetRegionsBySignal html tidyChromosomes html txs_dm6_chr4 html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'BRGenomics' as BRGenomics_1.7.0.zip * DONE (BRGenomics)