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### Running command:
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###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL AneuFinder
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* installing to library 'F:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'AneuFinder' ...
** using staged installation
** libs
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c R_interface.cpp -o R_interface.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c densities.cpp -o densities.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c init.cpp -o init.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c loghmm.cpp -o loghmm.o
loghmm.cpp:320: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  320 |  #pragma omp parallel for
      | 
loghmm.cpp:480: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  480 |  #pragma omp parallel for
      | 
loghmm.cpp:518: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  518 |   #pragma omp parallel for
      | 
loghmm.cpp:583: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  583 |  #pragma omp parallel for
      | 
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c scalehmm.cpp -o scalehmm.o
scalehmm.cpp:384: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  384 |  #pragma omp parallel for
      | 
scalehmm.cpp:400: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  400 |  #pragma omp parallel for
      | 
scalehmm.cpp:694: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  694 |  #pragma omp parallel for
      | 
scalehmm.cpp:732: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  732 |   #pragma omp parallel for
      | 
scalehmm.cpp:791: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  791 |  #pragma omp parallel for
      | 
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c utility.cpp -o utility.o
g++ -std=gnu++11 -shared -s -static-libgcc -o AneuFinder.dll tmp.def R_interface.o densities.o init.o loghmm.o scalehmm.o utility.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-AneuFinder/00new/AneuFinder/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (AneuFinder)