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This page was generated on 2022-03-18 11:06:53 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for ACME on riesling1


To the developers/maintainers of the ACME package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ACME.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 14/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ACME 2.51.0  (landing page)
Sean Davis
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/ACME
git_branch: master
git_last_commit: 50b4948
git_last_commit_date: 2021-10-26 11:51:02 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ACME
Version: 2.51.0
Command: rm -rf ACME.buildbin-libdir && mkdir ACME.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=ACME.buildbin-libdir ACME_2.51.0.tar.gz
StartedAt: 2022-03-17 20:51:22 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 20:52:03 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 41.7 seconds
RetCode: 0
Status:   OK  
PackageFile: ACME_2.51.0.zip
PackageFileSize: 10.03 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ACME.buildbin-libdir && mkdir ACME.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=ACME.buildbin-libdir ACME_2.51.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'ACME' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c windowChisq.c -o windowChisq.o
windowChisq.c: In function 'windowChisq':
windowChisq.c:58:14: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
    firstprobe>0) {
    ~~~~~~~~~~^~
windowChisq.c:63:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
    lastprobe<(na-1)) {
    ~~~~~~~~~^~~~~~~
windowChisq.c:21:11: warning: unused variable 'xa' [-Wunused-variable]
   double *xa,*xlocations,*xchivals;
           ^~
windowChisq.c: At top level:
windowChisq.c:86:20: warning: initialization of 'void * (*)()' from incompatible pointer type 'struct SEXPREC * (*)(struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *)' [-Wincompatible-pointer-types]
     {"windowChisq",&windowChisq,5},
                    ^
windowChisq.c:86:20: note: (near initialization for 'callMethods[0].fun')
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o ACME.dll tmp.def windowChisq.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/ACME.buildbin-libdir/00LOCK-ACME/00new/ACME/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ACME'
    finding HTML links ... done
    ACMECalcSet-class                       html  
    finding level-2 HTML links ... done

    ACMESet-class                           html  
    aGFF-class                              html  
    aGFFCalc-class                          html  
    do.aGFF.calc                            html  
    example.agff                            html  
    findClosestGene                         html  
    findRegions                             html  
    generics                                html  
    getRefflat                              html  
    read.resultsGFF                         html  
    write.bedGraph                          html  
    write.sgr                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'ACME' as ACME_2.51.0.zip
* DONE (ACME)