############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/zlibbioc_1.40.0.tar.gz && rm -rf zlibbioc.buildbin-libdir && mkdir zlibbioc.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=zlibbioc.buildbin-libdir zlibbioc_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL zlibbioc_1.40.0.zip && rm zlibbioc_1.40.0.tar.gz zlibbioc_1.40.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 92 165k 92 152k 0 0 368k 0 --:--:-- --:--:-- --:--:-- 369k 100 165k 100 165k 0 0 236k 0 --:--:-- --:--:-- --:--:-- 236k install for i386 * installing *source* package 'zlibbioc' ... ** using staged installation ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs mkdir -p "C:/Users/biocbuild/bbs-3.14-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/include" "C:/Users/biocbuild/bbs-3.14-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/libs/i386" make -C zlib-1.2.5 -f"C:/Users/BIOCBU~1/BBS-3~1.14-/R/etc/i386/Makeconf" -fwin32/Makefile.gcc libzbioc.a zlib1bioc.dll make[1]: Entering directory '/c/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpU3auwr/R.INSTALL132034cb2583/zlibbioc/src/zlib-1.2.5' win32/Makefile.gcc:90: warning: overriding recipe for target '.c.o' C:/Users/BIOCBU~1/BBS-3~1.14-/R/etc/i386/Makeconf:238: warning: ignoring old recipe for target '.c.o' "C:/rtools40/mingw32/bin/"gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o adler32.o adler32.c "C:/rtools40/mingw32/bin/"gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o compress.o compress.c "C:/rtools40/mingw32/bin/"gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o crc32.o crc32.c "C:/rtools40/mingw32/bin/"gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o deflate.o deflate.c "C:/rtools40/mingw32/bin/"gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzclose.o gzclose.c "C:/rtools40/mingw32/bin/"gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzlib.o gzlib.c "C:/rtools40/mingw32/bin/"gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzread.o gzread.c "C:/rtools40/mingw32/bin/"gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzwrite.o gzwrite.c "C:/rtools40/mingw32/bin/"gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o infback.o infback.c "C:/rtools40/mingw32/bin/"gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inffast.o inffast.c "C:/rtools40/mingw32/bin/"gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inflate.o inflate.c "C:/rtools40/mingw32/bin/"gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inftrees.o inftrees.c "C:/rtools40/mingw32/bin/"gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o trees.o trees.c "C:/rtools40/mingw32/bin/"gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o uncompr.o uncompr.c "C:/rtools40/mingw32/bin/"gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o zutil.o zutil.c "C:/rtools40/mingw32/bin/"ar rcs libzbioc.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o "C:/rtools40/mingw32/bin/"windres --define GCC_WINDRES --target=pe-i386 -o zlibrc.o win32/zlib1.rc "C:/rtools40/mingw32/bin/"gcc -m32 -shared -Wl,--out-implib,libzbiocdll.a \ -o zlib1bioc.dll win32/zlib.def adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o zlibrc.o "C:/rtools40/mingw32/bin/"strip zlib1bioc.dll make[1]: Leaving directory '/c/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpU3auwr/R.INSTALL132034cb2583/zlibbioc/src/zlib-1.2.5' cp zlib-1.2.5/libzbioc.a zlib-1.2.5/zlib1bioc.dll \ "C:/Users/biocbuild/bbs-3.14-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/libs/i386" cp zlib-1.2.5/zconf.h zlib-1.2.5/zlib.h "C:/Users/biocbuild/bbs-3.14-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/include" "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_zlibbioc.c -o R_init_zlibbioc.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o zlibbioc.dll tmp.def R_init_zlibbioc.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/zlibbioc.buildbin-libdir/00LOCK-zlibbioc/00new/zlibbioc/libs/i386 ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'zlibbioc' finding HTML links ... done pkgconfig html zlibbioc-package html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'zlibbioc' ... ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs mkdir -p "C:/Users/biocbuild/bbs-3.14-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include" "C:/Users/biocbuild/bbs-3.14-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64" make -C zlib-1.2.5 -f"C:/Users/BIOCBU~1/BBS-3~1.14-/R/etc/x64/Makeconf" -fwin32/Makefile.gcc libzbioc.a zlib1bioc.dll make[1]: Entering directory '/c/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpGaHYk5/R.INSTALL854318162e/zlibbioc/src/zlib-1.2.5' win32/Makefile.gcc:90: warning: overriding recipe for target '.c.o' C:/Users/BIOCBU~1/BBS-3~1.14-/R/etc/x64/Makeconf:238: warning: ignoring old recipe for target '.c.o' "C:/rtools40/mingw64/bin/"gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o adler32.o adler32.c "C:/rtools40/mingw64/bin/"gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o compress.o compress.c "C:/rtools40/mingw64/bin/"gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o crc32.o crc32.c "C:/rtools40/mingw64/bin/"gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o deflate.o deflate.c "C:/rtools40/mingw64/bin/"gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzclose.o gzclose.c "C:/rtools40/mingw64/bin/"gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzlib.o gzlib.c "C:/rtools40/mingw64/bin/"gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzread.o gzread.c "C:/rtools40/mingw64/bin/"gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzwrite.o gzwrite.c "C:/rtools40/mingw64/bin/"gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o infback.o infback.c "C:/rtools40/mingw64/bin/"gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inffast.o inffast.c "C:/rtools40/mingw64/bin/"gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inflate.o inflate.c "C:/rtools40/mingw64/bin/"gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inftrees.o inftrees.c "C:/rtools40/mingw64/bin/"gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o trees.o trees.c "C:/rtools40/mingw64/bin/"gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o uncompr.o uncompr.c "C:/rtools40/mingw64/bin/"gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o zutil.o zutil.c "C:/rtools40/mingw64/bin/"ar rcs libzbioc.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o "C:/rtools40/mingw64/bin/"windres --define GCC_WINDRES --target=pe-x86-64 -o zlibrc.o win32/zlib1.rc "C:/rtools40/mingw64/bin/"gcc -m64 -shared -Wl,--out-implib,libzbiocdll.a \ -o zlib1bioc.dll win32/zlib.def adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o zlibrc.o "C:/rtools40/mingw64/bin/"strip zlib1bioc.dll make[1]: Leaving directory '/c/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpGaHYk5/R.INSTALL854318162e/zlibbioc/src/zlib-1.2.5' cp zlib-1.2.5/libzbioc.a zlib-1.2.5/zlib1bioc.dll \ "C:/Users/biocbuild/bbs-3.14-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64" cp zlib-1.2.5/zconf.h zlib-1.2.5/zlib.h "C:/Users/biocbuild/bbs-3.14-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include" "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_zlibbioc.c -o R_init_zlibbioc.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o zlibbioc.dll tmp.def R_init_zlibbioc.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'zlibbioc' as zlibbioc_1.40.0.zip * DONE (zlibbioc) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'zlibbioc' successfully unpacked and MD5 sums checked