############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf variancePartition.buildbin-libdir && mkdir variancePartition.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=variancePartition.buildbin-libdir variancePartition_1.24.1.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'variancePartition' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading in method for 'calcVarPart' with signature '"negbin"': no definition for class "negbin" in method for 'checkModelStatus' with signature '"negbin"': no definition for class "negbin" Creating a new generic function for 'classifyTestsF' in package 'variancePartition' ** help *** installing help indices converting help for package 'variancePartition' finding HTML links ... done ESS-method html FMT-class html FMT html FMT.ZI html MArrayLM2-class html VarParCIList-class html VarParFitList-class html applyQualityWeights html as.data.frame.varPartResults html as.matrix-varPartResults-method html calcVarPart-method html canCorPairs html classifyTestsF-MArrayLM2-method html classifyTestsF html colinearityScore html dot-getAllUniContrasts html dot-isMixedModelFormula html dot-standard_transform html dream-method html dscchisq html eBayes-method html eBayesFMT html extractVarPart html fitExtractVarPartModel-method html fitVarPartModel-method html getContrast-method html getTreat-method html get_prediction-method html ggColorHue html isRunableFormula html makeContrastsDream html plotCompareP-method html plotContrasts html plotCorrMatrix html plotCorrStructure html plotPercentBars-method html plotStratify html plotStratifyBy html plotVarPart-method html plotVarianceEstimates html rdf.merMod html rdf_from_matrices html reOnly html residuals-MArrayLM-method html residuals-MArrayLM2-method html residuals-VarParFitList-method html residuals.MArrayLM2 html shrinkageMetric html sortCols-method html subset.MArrayLM2-method html toptable-method html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/variancePartition.buildbin-libdir/00LOCK-variancePartition/00new/variancePartition/help/toptable+2CFMT-method.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/variancePartition.buildbin-libdir/00LOCK-variancePartition/00new/variancePartition/help/toptable+2CMArrayLM2-method.html varParFrac-class html varPartConfInf html varPartDEdata html varPartData html varPartResults-class html voomWithDreamWeights html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'variancePartition' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'variancePartition' as variancePartition_1.24.1.zip * DONE (variancePartition)