Hao Chen
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/uSORT |
| git_branch: RELEASE_3_14 |
| git_last_commit: 8361250 |
| git_last_commit_date: 2021-10-26 12:30:07 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:32 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the uSORT package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/uSORT.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2033/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| uSORT 1.20.0 (landing page) Hao Chen
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: uSORT |
| Version: 1.20.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/uSORT_1.20.0.tar.gz && rm -rf uSORT.buildbin-libdir && mkdir uSORT.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=uSORT.buildbin-libdir uSORT_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL uSORT_1.20.0.zip && rm uSORT_1.20.0.tar.gz uSORT_1.20.0.zip |
| StartedAt: 2022-04-12 07:28:52 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:30:16 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 84.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/uSORT_1.20.0.tar.gz && rm -rf uSORT.buildbin-libdir && mkdir uSORT.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=uSORT.buildbin-libdir uSORT_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL uSORT_1.20.0.zip && rm uSORT_1.20.0.tar.gz uSORT_1.20.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
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100 1642k 100 1642k 0 0 2530k 0 --:--:-- --:--:-- --:--:-- 2530k
install for i386
* installing *source* package 'uSORT' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'BiocGenerics' for request: 'clusterEvalQ' when loading 'uSORT'
No methods found in package 'BiocGenerics' for request: 'parCapply' when loading 'uSORT'
No methods found in package 'BiocGenerics' for request: 'parRapply' when loading 'uSORT'
Note: break used in wrong context: no loop is visible
** help
*** installing help indices
converting help for package 'uSORT'
finding HTML links ... done
EXP_to_CellDataSet html
Rwanderlust html
SPIN html
STS_sorting html
STS_sorting_wrapper html
STS_sortingcost html
autoSPIN html
clusterGenes1 html
compareModels1 html
diff_test_helper1 html
differentialGeneTest1 html
distance.function html
driving_force_gene_selection html
elbow_detection html
fluidigmSC_analyzeGeneDetection html
fluidigmSC_identifyExpOutliers html
fluidigmSC_isElementIgnoreCase html
fluidigmSC_readLinearExp html
fluidigmSC_removeGenesByLinearExpForAllType
html
fluidigmSC_removeGenesByLinearExpForAllType_log2
html
monocle_wrapper html
neighborhood_sorting html
neighborhood_sorting_wrapper html
neighborhood_sortingcost html
pca_gene_selection html
sWanderlust html
scattering_quantification_per_gene html
sorting_method_parameter_GUI html
summed_local_variance html
summed_local_variance_cyclical html
summed_local_variance_linear html
trajectory_landmarks html
uSORT html
uSORT_GUI html
uSORT_parameters_GUI html
uSORT_preProcess html
uSORT_sorting_wrapper html
uSORT_write_results html
variability_per_gene html
wanderlust_wrapper html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'BiocGenerics' for request: 'clusterEvalQ' when loading 'uSORT'
No methods found in package 'BiocGenerics' for request: 'parCapply' when loading 'uSORT'
No methods found in package 'BiocGenerics' for request: 'parRapply' when loading 'uSORT'
** testing if installed package can be loaded from final location
No methods found in package 'BiocGenerics' for request: 'clusterEvalQ' when loading 'uSORT'
No methods found in package 'BiocGenerics' for request: 'parCapply' when loading 'uSORT'
No methods found in package 'BiocGenerics' for request: 'parRapply' when loading 'uSORT'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'uSORT' ...
** testing if installed package can be loaded
No methods found in package 'BiocGenerics' for request: 'clusterEvalQ' when loading 'uSORT'
No methods found in package 'BiocGenerics' for request: 'parCapply' when loading 'uSORT'
No methods found in package 'BiocGenerics' for request: 'parRapply' when loading 'uSORT'
* MD5 sums
packaged installation of 'uSORT' as uSORT_1.20.0.zip
* DONE (uSORT)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'uSORT' successfully unpacked and MD5 sums checked