############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/uSORT_1.20.0.tar.gz && rm -rf uSORT.buildbin-libdir && mkdir uSORT.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=uSORT.buildbin-libdir uSORT_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL uSORT_1.20.0.zip && rm uSORT_1.20.0.tar.gz uSORT_1.20.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 74 1642k 74 1221k 0 0 2309k 0 --:--:-- --:--:-- --:--:-- 2309k 100 1642k 100 1642k 0 0 2530k 0 --:--:-- --:--:-- --:--:-- 2530k install for i386 * installing *source* package 'uSORT' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading No methods found in package 'BiocGenerics' for request: 'clusterEvalQ' when loading 'uSORT' No methods found in package 'BiocGenerics' for request: 'parCapply' when loading 'uSORT' No methods found in package 'BiocGenerics' for request: 'parRapply' when loading 'uSORT' Note: break used in wrong context: no loop is visible ** help *** installing help indices converting help for package 'uSORT' finding HTML links ... done EXP_to_CellDataSet html Rwanderlust html SPIN html STS_sorting html STS_sorting_wrapper html STS_sortingcost html autoSPIN html clusterGenes1 html compareModels1 html diff_test_helper1 html differentialGeneTest1 html distance.function html driving_force_gene_selection html elbow_detection html fluidigmSC_analyzeGeneDetection html fluidigmSC_identifyExpOutliers html fluidigmSC_isElementIgnoreCase html fluidigmSC_readLinearExp html fluidigmSC_removeGenesByLinearExpForAllType html fluidigmSC_removeGenesByLinearExpForAllType_log2 html monocle_wrapper html neighborhood_sorting html neighborhood_sorting_wrapper html neighborhood_sortingcost html pca_gene_selection html sWanderlust html scattering_quantification_per_gene html sorting_method_parameter_GUI html summed_local_variance html summed_local_variance_cyclical html summed_local_variance_linear html trajectory_landmarks html uSORT html uSORT_GUI html uSORT_parameters_GUI html uSORT_preProcess html uSORT_sorting_wrapper html uSORT_write_results html variability_per_gene html wanderlust_wrapper html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package 'BiocGenerics' for request: 'clusterEvalQ' when loading 'uSORT' No methods found in package 'BiocGenerics' for request: 'parCapply' when loading 'uSORT' No methods found in package 'BiocGenerics' for request: 'parRapply' when loading 'uSORT' ** testing if installed package can be loaded from final location No methods found in package 'BiocGenerics' for request: 'clusterEvalQ' when loading 'uSORT' No methods found in package 'BiocGenerics' for request: 'parCapply' when loading 'uSORT' No methods found in package 'BiocGenerics' for request: 'parRapply' when loading 'uSORT' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'uSORT' ... ** testing if installed package can be loaded No methods found in package 'BiocGenerics' for request: 'clusterEvalQ' when loading 'uSORT' No methods found in package 'BiocGenerics' for request: 'parCapply' when loading 'uSORT' No methods found in package 'BiocGenerics' for request: 'parRapply' when loading 'uSORT' * MD5 sums packaged installation of 'uSORT' as uSORT_1.20.0.zip * DONE (uSORT) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'uSORT' successfully unpacked and MD5 sums checked