############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/transite_1.12.1.tar.gz && rm -rf transite.buildbin-libdir && mkdir transite.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=transite.buildbin-libdir transite_1.12.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL transite_1.12.1.zip && rm transite_1.12.1.tar.gz transite_1.12.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 78 597k 78 467k 0 0 831k 0 --:--:-- --:--:-- --:--:-- 830k 100 597k 100 597k 0 0 926k 0 --:--:-- --:--:-- --:--:-- 926k install for i386 * installing *source* package 'transite' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c scoring.cpp -o scoring.o C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o transite.dll tmp.def RcppExports.o scoring.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/transite.buildbin-libdir/00LOCK-transite/00new/transite/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'transite' finding HTML links ... done RBPMotif-class html SpectrumScore-class html calculate_kmer_enrichment html calculate_local_consistency html calculate_motif_enrichment html calculate_transcript_mc html check_kmers html classify_spectrum html compute_kmer_enrichment html count_homopolymer_corrected_kmers html create_kmer_motif html create_matrix_motif html draw_volcano_plot html estimate_significance html estimate_significance_core html ge html generate_iupac_by_kmers html generate_iupac_by_matrix html generate_kmers html generate_kmers_from_iupac html generate_permuted_enrichments html geometric_mean html get_motif_by_id html get_motif_by_rbp html get_motifs html get_motifs_meta_info html get_ppm html init_iupac_lookup_table html kmers_enrichment html motifs html p_combine html run_kmer_spma html run_kmer_tsma html run_matrix_spma html run_matrix_tsma html score_sequences html score_spectrum html score_transcripts html score_transcripts_single_motif html set_motifs html subdivide_data html toy_motif_matrix html transite html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'transite' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c scoring.cpp -o scoring.o C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o transite.dll tmp.def RcppExports.o scoring.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/transite.buildbin-libdir/transite/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'transite' as transite_1.12.1.zip * DONE (transite) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'transite' successfully unpacked and MD5 sums checked