Back to Multiple platform build/check report for BioC 3.14
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

This page was generated on 2022-04-13 12:07:29 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for tilingArray on tokay2


To the developers/maintainers of the tilingArray package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/tilingArray.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1955/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tilingArray 1.72.0  (landing page)
Zhenyu Xu
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/tilingArray
git_branch: RELEASE_3_14
git_last_commit: b7c6272
git_last_commit_date: 2021-10-26 11:47:46 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: tilingArray
Version: 1.72.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/tilingArray_1.72.0.tar.gz && rm -rf tilingArray.buildbin-libdir && mkdir tilingArray.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tilingArray.buildbin-libdir tilingArray_1.72.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL tilingArray_1.72.0.zip && rm tilingArray_1.72.0.tar.gz tilingArray_1.72.0.zip
StartedAt: 2022-04-12 05:52:52 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 05:54:46 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 113.7 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/tilingArray_1.72.0.tar.gz && rm -rf tilingArray.buildbin-libdir && mkdir tilingArray.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tilingArray.buildbin-libdir tilingArray_1.72.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL tilingArray_1.72.0.zip && rm tilingArray_1.72.0.tar.gz tilingArray_1.72.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1161k  100 1161k    0     0  1352k      0 --:--:-- --:--:-- --:--:-- 1353k

install for i386

* installing *source* package 'tilingArray' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c findsegments.c -o findsegments.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c sampleStep.c -o sampleStep.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o tilingArray.dll tmp.def findsegments.o sampleStep.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/tilingArray.buildbin-libdir/00LOCK-tilingArray/00new/tilingArray/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'tilingArray'
    finding HTML links ... done
    PMindex                                 html  
    breakpointsPretend                      html  
    class-segmentation                      html  
    comparisonPlot                          html  
    costMatrix                              html  
    findsegments                            html  
    gffSub                                  html  
    normalizeByReference                    html  
    otherStrand                             html  
    plotAlongChrom                          html  
    plotAlongChromLegend                    html  
    plotFeatures                            html  
    plotSegmentationDots                    html  
    plotSegmentationHeatmap                 html  
    plotpenLL                               html  
    posMin                                  html  
    qcPlots                                 html  
    readCel2eSet                            html  
    sampleStep                              html  
    segChrom                                html  
    segment                                 html  
    segnf                                   html  
    tilingArray-package                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'tilingArray' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c findsegments.c -o findsegments.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c sampleStep.c -o sampleStep.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o tilingArray.dll tmp.def findsegments.o sampleStep.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/tilingArray.buildbin-libdir/tilingArray/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'tilingArray' as tilingArray_1.72.0.zip
* DONE (tilingArray)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'tilingArray' successfully unpacked and MD5 sums checked