Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:07:28 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for tidybulk on tokay2


To the developers/maintainers of the tidybulk package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/tidybulk.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1950/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tidybulk 1.6.1  (landing page)
Stefano Mangiola
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/tidybulk
git_branch: RELEASE_3_14
git_last_commit: 13706d8
git_last_commit_date: 2021-10-28 23:23:06 -0400 (Thu, 28 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: tidybulk
Version: 1.6.1
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/tidybulk_1.6.1.tar.gz && rm -rf tidybulk.buildbin-libdir && mkdir tidybulk.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tidybulk.buildbin-libdir tidybulk_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL tidybulk_1.6.1.zip && rm tidybulk_1.6.1.tar.gz tidybulk_1.6.1.zip
StartedAt: 2022-04-12 06:26:39 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:30:44 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 245.4 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/tidybulk_1.6.1.tar.gz && rm -rf tidybulk.buildbin-libdir && mkdir tidybulk.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tidybulk.buildbin-libdir tidybulk_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL tidybulk_1.6.1.zip && rm tidybulk_1.6.1.tar.gz tidybulk_1.6.1.zip
###
##############################################################################
##############################################################################


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 35 3550k   35 1257k    0     0  1206k      0  0:00:02  0:00:01  0:00:01 1206k
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100 3550k  100 3550k    0     0  1733k      0  0:00:02  0:00:02 --:--:-- 1733k

install for i386

* installing *source* package 'tidybulk' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Note: wrong number of arguments to 'floor' 
Note: wrong number of arguments to 'floor' 
** help
*** installing help indices
  converting help for package 'tidybulk'
    finding HTML links ... done
    X_cibersort                             html  
    adjust_abundance-methods                html  
    aggregate_duplicates-methods            html  
    arrange-methods                         html  
    as_SummarizedExperiment-methods         html  
    as_matrix                               html  
    bind-methods                            html  
    breast_tcga_mini_SE                     html  
    check_if_counts_is_na                   html  
    check_if_duplicated_genes               html  
    check_if_wrong_input                    html  
    cluster_elements-methods                html  
    counts_SE                               html  
    counts_ensembl                          html  
    deconvolve_cellularity-methods          html  
    describe_transcript-methods             html  
    distinct-methods                        html  
    dplyr-methods                           html  
    ensembl_symbol_mapping                  html  
    ensembl_to_symbol-methods               html  
    fill_missing_abundance-methods          html  
    filter-methods                          html  
    flybaseIDs                              html  
    get_bibliography-methods                html  
    get_reduced_dimensions_UMAP_bulk        html  
    get_reduced_dimensions_UMAP_bulk_SE     html  
    group_by-methods                        html  
    identify_abundant-methods               html  
    impute_missing_abundance-methods        html  
    join-methods                            html  
    keep_abundant-methods                   html  
    keep_variable-methods                   html  
    log10_reverse_trans                     html  
    logit_trans                             html  
    mutate-methods                          html  
    nest-methods                            html  
    pipe                                    html  
    pivot_sample-methods                    html  
    pivot_transcript-methods                html  
    reduce_dimensions-methods               html  
    reexports                               html  
    remove_redundancy-methods               html  
    rename-methods                          html  
    rotate_dimensions-methods               html  
    rowwise-methods                         html  
    scale_abundance-methods                 html  
    se                                      html  
    se_mini                                 html  
    summarise-methods                       html  
    symbol_to_entrez                        html  
    test_deseq2_df                          html  
    test_differential_abundance-methods     html  
    test_differential_cellularity-methods   html  
    test_gene_enrichment-methods            html  
    test_gene_overrepresentation-methods    html  
    test_gene_rank-methods                  html  
    test_stratification_cellularity-methods
                                            html  
    tidybulk-methods                        html  
    tidybulk_SAM_BAM-methods                html  
    vignette_manuscript_signature_boxplot   html  
    vignette_manuscript_signature_tsne      html  
    vignette_manuscript_signature_tsne2     html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'tidybulk' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'tidybulk' as tidybulk_1.6.1.zip
* DONE (tidybulk)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'tidybulk' successfully unpacked and MD5 sums checked