############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/tidybulk_1.6.1.tar.gz && rm -rf tidybulk.buildbin-libdir && mkdir tidybulk.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tidybulk.buildbin-libdir tidybulk_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL tidybulk_1.6.1.zip && rm tidybulk_1.6.1.tar.gz tidybulk_1.6.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 35 3550k 35 1257k 0 0 1206k 0 0:00:02 0:00:01 0:00:01 1206k 98 3550k 98 3506k 0 0 1717k 0 0:00:02 0:00:02 --:--:-- 1717k 100 3550k 100 3550k 0 0 1733k 0 0:00:02 0:00:02 --:--:-- 1733k install for i386 * installing *source* package 'tidybulk' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Note: wrong number of arguments to 'floor' Note: wrong number of arguments to 'floor' ** help *** installing help indices converting help for package 'tidybulk' finding HTML links ... done X_cibersort html adjust_abundance-methods html aggregate_duplicates-methods html arrange-methods html as_SummarizedExperiment-methods html as_matrix html bind-methods html breast_tcga_mini_SE html check_if_counts_is_na html check_if_duplicated_genes html check_if_wrong_input html cluster_elements-methods html counts_SE html counts_ensembl html deconvolve_cellularity-methods html describe_transcript-methods html distinct-methods html dplyr-methods html ensembl_symbol_mapping html ensembl_to_symbol-methods html fill_missing_abundance-methods html filter-methods html flybaseIDs html get_bibliography-methods html get_reduced_dimensions_UMAP_bulk html get_reduced_dimensions_UMAP_bulk_SE html group_by-methods html identify_abundant-methods html impute_missing_abundance-methods html join-methods html keep_abundant-methods html keep_variable-methods html log10_reverse_trans html logit_trans html mutate-methods html nest-methods html pipe html pivot_sample-methods html pivot_transcript-methods html reduce_dimensions-methods html reexports html remove_redundancy-methods html rename-methods html rotate_dimensions-methods html rowwise-methods html scale_abundance-methods html se html se_mini html summarise-methods html symbol_to_entrez html test_deseq2_df html test_differential_abundance-methods html test_differential_cellularity-methods html test_gene_enrichment-methods html test_gene_overrepresentation-methods html test_gene_rank-methods html test_stratification_cellularity-methods html tidybulk-methods html tidybulk_SAM_BAM-methods html vignette_manuscript_signature_boxplot html vignette_manuscript_signature_tsne html vignette_manuscript_signature_tsne2 html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'tidybulk' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'tidybulk' as tidybulk_1.6.1.zip * DONE (tidybulk) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'tidybulk' successfully unpacked and MD5 sums checked