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This page was generated on 2022-04-13 12:07:27 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for sva on tokay2


To the developers/maintainers of the sva package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sva.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1909/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sva 3.42.0  (landing page)
Jeffrey T. Leek , John D. Storey
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/sva
git_branch: RELEASE_3_14
git_last_commit: 54c843c
git_last_commit_date: 2021-10-26 12:00:51 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: sva
Version: 3.42.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/sva_3.42.0.tar.gz && rm -rf sva.buildbin-libdir && mkdir sva.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sva.buildbin-libdir sva_3.42.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL sva_3.42.0.zip && rm sva_3.42.0.tar.gz sva_3.42.0.zip
StartedAt: 2022-04-12 05:56:06 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 05:56:55 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 49.4 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/sva_3.42.0.tar.gz && rm -rf sva.buildbin-libdir && mkdir sva.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sva.buildbin-libdir sva_3.42.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL sva_3.42.0.zip && rm sva_3.42.0.tar.gz sva_3.42.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  7  203k    7 16011    0     0   133k      0  0:00:01 --:--:--  0:00:01  133k
100  203k  100  203k    0     0   540k      0 --:--:-- --:--:-- --:--:--  539k

install for i386

* installing *source* package 'sva' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c sva.c -o sva.o
sva.c:27:34: warning: missing braces around initializer [-Wmissing-braces]
 R_CallMethodDef callMethods[]  = {
                                  ^
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o sva.dll tmp.def sva.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/sva.buildbin-libdir/00LOCK-sva/00new/sva/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'sva'
    finding HTML links ... done
    ComBat                                  html  
    ComBat_seq                              html  
    empirical.controls                      html  
    f.pvalue                                html  
    fstats                                  html  
    fsva                                    html  
    irwsva.build                            html  
    num.sv                                  html  
    psva                                    html  
    qsva                                    html  
    read.degradation.matrix                 html  
    ssva                                    html  
    sva                                     html  
    sva.check                               html  
    sva_network                             html  
    svaseq                                  html  
    twostepsva.build                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'sva' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c sva.c -o sva.o
sva.c:27:34: warning: missing braces around initializer [-Wmissing-braces]
 R_CallMethodDef callMethods[]  = {
                                  ^
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o sva.dll tmp.def sva.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/sva.buildbin-libdir/sva/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sva' as sva_3.42.0.zip
* DONE (sva)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'sva' successfully unpacked and MD5 sums checked