############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/sva_3.42.0.tar.gz && rm -rf sva.buildbin-libdir && mkdir sva.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sva.buildbin-libdir sva_3.42.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL sva_3.42.0.zip && rm sva_3.42.0.tar.gz sva_3.42.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 7 203k 7 16011 0 0 133k 0 0:00:01 --:--:-- 0:00:01 133k 100 203k 100 203k 0 0 540k 0 --:--:-- --:--:-- --:--:-- 539k install for i386 * installing *source* package 'sva' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sva.c -o sva.o sva.c:27:34: warning: missing braces around initializer [-Wmissing-braces] R_CallMethodDef callMethods[] = { ^ C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o sva.dll tmp.def sva.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/sva.buildbin-libdir/00LOCK-sva/00new/sva/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sva' finding HTML links ... done ComBat html ComBat_seq html empirical.controls html f.pvalue html fstats html fsva html irwsva.build html num.sv html psva html qsva html read.degradation.matrix html ssva html sva html sva.check html sva_network html svaseq html twostepsva.build html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'sva' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sva.c -o sva.o sva.c:27:34: warning: missing braces around initializer [-Wmissing-braces] R_CallMethodDef callMethods[] = { ^ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o sva.dll tmp.def sva.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/sva.buildbin-libdir/sva/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'sva' as sva_3.42.0.zip * DONE (sva) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'sva' successfully unpacked and MD5 sums checked