############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf surfaltr.buildbin-libdir && mkdir surfaltr.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=surfaltr.buildbin-libdir surfaltr_1.0.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'surfaltr' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'surfaltr' finding HTML links ... done Crb1 html align_org_prts html align_prts html check_tmhmm_install html clean_data html ensembl_db_retrieval html format_ids html get_aas html get_pairs html get_phobius html get_prts html get_tmhmm html graph_from_aas html graph_from_ids html graph_prots html hpa_genes html hpa_mouse_genes html merge_trans html plot_isoforms html process_tmhmm html rank_prts html run_phobius html split_fasta html test_surfaltr html tmhmm_fix_path html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'surfaltr' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'surfaltr' as surfaltr_1.0.0.zip * DONE (surfaltr)