############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/seqTools_1.28.0.tar.gz && rm -rf seqTools.buildbin-libdir && mkdir seqTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqTools.buildbin-libdir seqTools_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL seqTools_1.28.0.zip && rm seqTools_1.28.0.tar.gz seqTools_1.28.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 106k 100 106k 0 0 227k 0 --:--:-- --:--:-- --:--:-- 227k install for i386 * installing *source* package 'seqTools' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c seqTools.c -o seqTools.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o seqTools.dll tmp.def seqTools.o -lm -LC:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/seqTools.buildbin-libdir/00LOCK-seqTools/00new/seqTools/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'seqTools' finding HTML links ... done Fastqq-class html ascii2char html cbDistMatrix html collectDur html countDnaKmers html countFastaKmers html countGenomeKmers html countSpliceKmers html fastqKmerLocs html fastqKmerSubsetLocs html fastqq html gcContentMatrix html kMerIndex html meltDownK html mergeFastqq html mergedPhred html phredDist html phredTable html plotGCcontent html plotKmerCount html plotNucCount html plotNucFreq html plotPhredQuant html propPhred html revCountDnaKmers html seqTools-package html simFastqqRunTimes html sim_fq html trimFastq html writeFai html writeSimContFastq html writeSimFastq html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'seqTools' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c seqTools.c -o seqTools.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o seqTools.dll tmp.def seqTools.o -lm -LC:/Users/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/seqTools.buildbin-libdir/seqTools/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'seqTools' as seqTools_1.28.0.zip * DONE (seqTools) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'seqTools' successfully unpacked and MD5 sums checked