############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/seqCNA_1.40.0.tar.gz && rm -rf seqCNA.buildbin-libdir && mkdir seqCNA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqCNA.buildbin-libdir seqCNA_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL seqCNA_1.40.0.zip && rm seqCNA_1.40.0.tar.gz seqCNA_1.40.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 89252 100 89252 0 0 561k 0 --:--:-- --:--:-- --:--:-- 565k install for i386 * installing *source* package 'seqCNA' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c seqCNA.cpp -o seqCNA.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o seqCNA.dll tmp.def seqCNA.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/seqCNA.buildbin-libdir/00LOCK-seqCNA/00new/seqCNA/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'seqCNA' finding HTML links ... done SeqCNAInfo-class html applyFilters html applyThresholds html plotCNProfile html readSeqsumm html runGLAD html runSeqnorm html runSeqsumm html seqCNA-package html seqsumm_HCC1143 html writeCNProfile html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'seqCNA' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c seqCNA.cpp -o seqCNA.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o seqCNA.dll tmp.def seqCNA.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/seqCNA.buildbin-libdir/seqCNA/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'seqCNA' as seqCNA_1.40.0.zip * DONE (seqCNA) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'seqCNA' successfully unpacked and MD5 sums checked