############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/seqCAT_1.16.1.tar.gz && rm -rf seqCAT.buildbin-libdir && mkdir seqCAT.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqCAT.buildbin-libdir seqCAT_1.16.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL seqCAT_1.16.1.zip && rm seqCAT_1.16.1.tar.gz seqCAT_1.16.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 20 2403k 20 492k 0 0 1193k 0 0:00:02 --:--:-- 0:00:02 1193k 100 2403k 100 2403k 0 0 1949k 0 0:00:01 0:00:01 --:--:-- 1951k install for i386 * installing *source* package 'seqCAT' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'seqCAT' finding HTML links ... done calculate_similarity html compare_many html compare_profiles html create_profile html create_profiles html filter_duplicates html filter_variants html list_cosmic html list_variants html plot_heatmap html plot_impacts html plot_variant_list html read_cosmic html read_profile html read_profiles html seqCAT html test_comparison html test_profile_1 html test_profile_2 html test_profile_3 html test_similarities html test_variant_list html write_profile html write_profiles html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'seqCAT' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'seqCAT' as seqCAT_1.16.1.zip * DONE (seqCAT) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'seqCAT' successfully unpacked and MD5 sums checked