############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/scater_1.22.0.tar.gz && rm -rf scater.buildbin-libdir && mkdir scater.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scater.buildbin-libdir scater_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL scater_1.22.0.zip && rm scater_1.22.0.tar.gz scater_1.22.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 17 1065k 17 181k 0 0 403k 0 0:00:02 --:--:-- 0:00:02 403k 100 1065k 100 1065k 0 0 785k 0 0:00:01 0:00:01 --:--:-- 785k install for i386 * installing *source* package 'scater' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'scater' finding HTML links ... done SCESet html accessors html finding level-2 HTML links ... done annotateBMFeatures html bootstraps html defunct html getExplanatoryPCs html getVarianceExplained html ggsce html multiplot html nexprs html plotColData html plotDots html plotExplanatoryPCs html plotExplanatoryVariables html plotExpression html plotGroupedHeatmap html plotHeatmap html plotHighestExprs html plotPlatePosition html plotRLE html plotReducedDim html plotRowData html plotScater html plot_reddim html reexports html retrieveCellInfo html retrieveFeatureInfo html runColDataPCA html runDiffusionMap html runMDS html runMultiUMAP html runNMF html runPCA html runTSNE html runUMAP html scater-pkg html scater-plot-args html toSingleCellExperiment html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'scater' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'scater' as scater_1.22.0.zip * DONE (scater) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'scater' successfully unpacked and MD5 sums checked