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This page was generated on 2022-04-13 12:07:18 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for scClassify on tokay2


To the developers/maintainers of the scClassify package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scClassify.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1716/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scClassify 1.6.0  (landing page)
Yingxin Lin
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/scClassify
git_branch: RELEASE_3_14
git_last_commit: cf2735b
git_last_commit_date: 2021-10-26 12:59:09 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: scClassify
Version: 1.6.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:scClassify.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings scClassify_1.6.0.tar.gz
StartedAt: 2022-04-13 02:21:14 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 02:31:19 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 605.1 seconds
RetCode: 0
Status:   OK  
CheckDir: scClassify.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:scClassify.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings scClassify_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/scClassify.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'scClassify/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'scClassify' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'scClassify' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
runSampleCal            110.02   1.86  104.97
predict_scClassifyJoint  23.63   0.75   22.11
scClassify               15.39   0.23   14.84
predict_scClassify       13.66   0.77   13.67
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
runSampleCal            107.00   0.59  105.38
predict_scClassifyJoint  23.91   1.80   23.30
predict_scClassify       15.20   0.50   14.93
scClassify               13.30   0.17   12.81
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

scClassify.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/scClassify_1.6.0.tar.gz && rm -rf scClassify.buildbin-libdir && mkdir scClassify.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scClassify.buildbin-libdir scClassify_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL scClassify_1.6.0.zip && rm scClassify_1.6.0.tar.gz scClassify_1.6.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 43 2345k   43 1030k    0     0   995k      0  0:00:02  0:00:01  0:00:01  995k
100 2345k  100 2345k    0     0  1366k      0  0:00:01  0:00:01 --:--:-- 1366k

install for i386

* installing *source* package 'scClassify' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'scClassify'
    finding HTML links ... done
    cellTypeTrain                           html  
    cellTypeTree                            html  
    dot-scClassifyTrainModel                html  
    features                                html  
    getN                                    html  
    learningCurve                           html  
    model                                   html  
    modelweights                            html  
    name                                    html  
    plotCellTypeTree                        html  
    predict_scClassify                      html  
    predict_scClassifyJoint                 html  
    runHOPACH                               html  
    runSampleCal                            html  
    scClassify                              html  
    scClassifyTrainModel-class              html  
    scClassifyTrainModelList-class          html  
    scClassifyTrainModelList                html  
    scClassify_example                      html  
    trainClassExample_wang                  html  
    trainClassExample_xin                   html  
    train_scClassify                        html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'scClassify' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'scClassify' as scClassify_1.6.0.zip
* DONE (scClassify)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'scClassify' successfully unpacked and MD5 sums checked

Tests output


Example timings

scClassify.Rcheck/examples_i386/scClassify-Ex.timings

nameusersystemelapsed
cellTypeTrain0.100.020.11
cellTypeTree0.110.000.11
features0.110.000.11
getN0.140.000.14
learningCurve0.680.000.69
model0.500.270.76
modelweights0.100.010.11
name0.090.000.10
plotCellTypeTree0.290.000.30
predict_scClassify13.66 0.7713.67
predict_scClassifyJoint23.63 0.7522.11
runHOPACH0.570.110.69
runSampleCal110.02 1.86104.97
scClassify15.39 0.2314.84
scClassifyTrainModelList0.190.020.20
train_scClassify1.310.311.63

scClassify.Rcheck/examples_x64/scClassify-Ex.timings

nameusersystemelapsed
cellTypeTrain0.110.000.11
cellTypeTree0.090.020.11
features0.130.000.13
getN0.140.000.14
learningCurve0.120.000.12
model0.660.140.80
modelweights0.090.010.11
name0.080.030.11
plotCellTypeTree0.970.000.97
predict_scClassify15.20 0.5014.93
predict_scClassifyJoint23.91 1.8023.30
runHOPACH0.840.020.86
runSampleCal107.00 0.59105.38
scClassify13.30 0.1712.81
scClassifyTrainModelList0.170.020.19
train_scClassify2.020.042.06