############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/sangeranalyseR_1.4.0.tar.gz && rm -rf sangeranalyseR.buildbin-libdir && mkdir sangeranalyseR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sangeranalyseR.buildbin-libdir sangeranalyseR_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL sangeranalyseR_1.4.0.zip && rm sangeranalyseR_1.4.0.tar.gz sangeranalyseR_1.4.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 1 41.4M 1 470k 0 0 701k 0 0:01:00 --:--:-- 0:01:00 701k 4 41.4M 4 1986k 0 0 1189k 0 0:00:35 0:00:01 0:00:34 1189k 10 41.4M 10 4367k 0 0 1638k 0 0:00:25 0:00:02 0:00:23 1638k 17 41.4M 17 7596k 0 0 2082k 0 0:00:20 0:00:03 0:00:17 2081k 27 41.4M 27 11.5M 0 0 2545k 0 0:00:16 0:00:04 0:00:12 2545k 39 41.4M 39 16.5M 0 0 3005k 0 0:00:14 0:00:05 0:00:09 3316k 54 41.4M 54 22.4M 0 0 3465k 0 0:00:12 0:00:06 0:00:06 4229k 70 41.4M 70 29.2M 0 0 3925k 0 0:00:10 0:00:07 0:00:03 5150k 80 41.4M 80 33.4M 0 0 3957k 0 0:00:10 0:00:08 0:00:02 5326k 92 41.4M 92 38.4M 0 0 4076k 0 0:00:10 0:00:09 0:00:01 5498k 100 41.4M 100 41.4M 0 0 4170k 0 0:00:10 0:00:10 --:--:-- 5622k install for i386 * installing *source* package 'sangeranalyseR' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Note: wrong number of arguments to '==' ** help *** installing help indices converting help for package 'sangeranalyseR' finding HTML links ... done ChromatogramParam-class html MakeBaseCalls-methods html ObjectResults-class html QualityReport-class-qualityBasePlot html QualityReport-class-updateQualityParam html QualityReport-class html SangerAlignment-class-generateReportSA html SangerAlignment-class-launchAppSA html SangerAlignment-class-updateQualityParam html SangerAlignment-class-writeFastaSA html SangerAlignment-class html SangerAlignment html SangerContig-class-generateReportSC html SangerContig-class-launchAppSC html SangerContig-class-readTable html SangerContig-class-updateQualityParam html SangerContig-class-writeFastaSC html SangerContig-class html SangerContig html SangerRead-class-MakeBaseCalls html SangerRead-class-generateReportSR html SangerRead-class-qualityBasePlot html SangerRead-class-readTable html SangerRead-class-updateQualityParam html SangerRead-class-writeFastaSR html SangerRead-class html SangerRead html generateReport html generateReportSA-methods html generateReportSC-methods html generateReportSR-methods html launchApp html launchAppSA-methods html launchAppSC-methods html qualityBasePlot-methods html qualityReportData html readTable-methods html sangerAlignmentData html sangerContigData html sangerReadFData html sangeranalyseR html updateQualityParam-methods html writeFasta html writeFastaSA-methods html writeFastaSC-methods html writeFastaSR-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'sangeranalyseR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'sangeranalyseR' as sangeranalyseR_1.4.0.zip * DONE (sangeranalyseR) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'sangeranalyseR' successfully unpacked and MD5 sums checked