############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf rqubic.buildbin-libdir && mkdir rqubic.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rqubic.buildbin-libdir rqubic_1.40.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'rqubic' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c bicluster.c -o bicluster.o bicluster.c: In function 'seed_intersect_r': bicluster.c:354:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (flag=ss) (*m_cnt)++; ^~~~ "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c discretize.c -o discretize.o In file included from discretize.c:9: rqubic.h:62:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable] static const char *MINCOL_ATT_NAME="minimumCol"; ^~~~~~~~~~~~~~~ rqubic.h:61:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable] static const char *EDGELIST_ATT_NAME="edgelist"; ^~~~~~~~~~~~~~~~~ "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fib.c -o fib.o In file included from fib.c:35: rqubic.h:62:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable] static const char *MINCOL_ATT_NAME="minimumCol"; ^~~~~~~~~~~~~~~ rqubic.h:61:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable] static const char *EDGELIST_ATT_NAME="edgelist"; ^~~~~~~~~~~~~~~~~ "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c graph.c -o graph.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rqubic.c -o rqubic.o In file included from rqubic.c:5: rqubic.h:62:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable] static const char *MINCOL_ATT_NAME="minimumCol"; ^~~~~~~~~~~~~~~ rqubic.h:61:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable] static const char *EDGELIST_ATT_NAME="edgelist"; ^~~~~~~~~~~~~~~~~ C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o rqubic.dll tmp.def bicluster.o discretize.o fib.o graph.o rqubic.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/rqubic.buildbin-libdir/00LOCK-rqubic/00new/rqubic/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'rqubic' finding HTML links ... done QUBICBiclusterSet-class html finding level-2 HTML links ... done combineBiclusts-methods html discretize html eSetDimName html fcFilter-methods html fcFilter html features-methods html generateSeeds-methods html parseQubicBlocks html quBicluster html readBiclusterResults html rqubic-package html writeQubicInputFile html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'rqubic' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c bicluster.c -o bicluster.o bicluster.c: In function 'seed_intersect_r': bicluster.c:354:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (flag=ss) (*m_cnt)++; ^~~~ "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c discretize.c -o discretize.o In file included from discretize.c:9: rqubic.h:62:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable] static const char *MINCOL_ATT_NAME="minimumCol"; ^~~~~~~~~~~~~~~ rqubic.h:61:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable] static const char *EDGELIST_ATT_NAME="edgelist"; ^~~~~~~~~~~~~~~~~ "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fib.c -o fib.o In file included from fib.c:35: rqubic.h:62:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable] static const char *MINCOL_ATT_NAME="minimumCol"; ^~~~~~~~~~~~~~~ rqubic.h:61:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable] static const char *EDGELIST_ATT_NAME="edgelist"; ^~~~~~~~~~~~~~~~~ "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c graph.c -o graph.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rqubic.c -o rqubic.o In file included from rqubic.c:5: rqubic.h:62:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable] static const char *MINCOL_ATT_NAME="minimumCol"; ^~~~~~~~~~~~~~~ rqubic.h:61:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable] static const char *EDGELIST_ATT_NAME="edgelist"; ^~~~~~~~~~~~~~~~~ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o rqubic.dll tmp.def bicluster.o discretize.o fib.o graph.o rqubic.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/rqubic.buildbin-libdir/rqubic/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'rqubic' as rqubic_1.40.0.zip * DONE (rqubic)