############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data rGADEM ### ############################################################################## ############################################################################## * checking for file ‘rGADEM/DESCRIPTION’ ... OK * preparing ‘rGADEM’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ...sh: line 1: 96924 Abort trap: 6 '/Library/Frameworks/R.framework/Resources/bin/Rscript' --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)" > '/tmp/RtmpJzqsxq/xshell1556c44866666' 2>&1 ERROR --- re-building ‘rGADEM.Rnw’ using Sweave Loading required package: Biostrings Loading required package: BiocGenerics Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min Loading required package: S4Vectors Loading required package: stats4 Attaching package: ‘S4Vectors’ The following objects are masked from ‘package:base’: I, expand.grid, unname Loading required package: IRanges Loading required package: XVector Loading required package: GenomeInfoDb Attaching package: ‘Biostrings’ The following object is masked from ‘package:base’: strsplit Loading required package: BSgenome Loading required package: GenomicRanges Loading required package: rtracklayer Loading required package: seqLogo Loading required package: grid Attaching package: ‘grid’ The following object is masked from ‘package:Biostrings’: pattern Attaching package: ‘rGADEM’ The following object is masked from ‘package:seqLogo’: consensus *** caught segfault ***