############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/qpgraph_2.28.2.tar.gz && rm -rf qpgraph.buildbin-libdir && mkdir qpgraph.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qpgraph.buildbin-libdir qpgraph_2.28.2.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL qpgraph_2.28.2.zip && rm qpgraph_2.28.2.tar.gz qpgraph_2.28.2.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 5 1861k 5 101k 0 0 529k 0 0:00:03 --:--:-- 0:00:03 530k 100 1861k 100 1861k 0 0 1650k 0 0:00:01 0:00:01 --:--:-- 1651k install for i386 * installing *source* package 'qpgraph' ... ** using staged installation ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cliquer.c -o cliquer.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c graph.c -o graph.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c qpgraph.c -o qpgraph.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c reorder.c -o reorder.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o qpgraph.dll tmp.def cliquer.o graph.o qpgraph.o reorder.o -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRblas -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/qpgraph.buildbin-libdir/00LOCK-qpgraph/00new/qpgraph/libs/i386 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'det' from package 'Matrix' in package 'qpgraph' ** help *** installing help indices converting help for package 'qpgraph' finding HTML links ... done EcoliOxygen html HMgmm-class html SsdMatrix-class html UGgmm-class html eQTLcross-class html eQTLnetwork-class html eQTLnetworkEstimate html eQTLnetworkEstimationParam-class html filterCollinearities html graphParam-class html qpAllCItests html qpAnyGraph html qpAvgNrr html qpBoundary html qpCItest html qpClique html qpCliqueNumber html qpCov html qpEdgeNrr html qpFunctionalCoherence html qpG2Sigma html qpGenNrr html qpGetCliques html qpGraph-class html qpGraphDensity html qpHTF html qpHist html qpIPF html qpImportNrr html qpK2ParCor html qpNrr html qpPAC html qpPCC html qpPRscoreThreshold html qpPathWeight html qpPlotMap html qpPlotNetwork html qpPrecisionRecall html qpRndGraph html qpRndWishart html qpTopPairs html qpUnifRndAssociation html qpUpdateCliquesRemoving html qpgraph-package html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/qpgraph.buildbin-libdir/00LOCK-qpgraph/00new/qpgraph/help/qpgraph.html ** building package indices ** installing vignettes 'eQTLnetworks.Rnw' 'qpTxRegNet.Rnw' 'qpgraphSimulate.Rnw' ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'qpgraph' ... ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cliquer.c -o cliquer.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c graph.c -o graph.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c qpgraph.c -o qpgraph.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c reorder.c -o reorder.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o qpgraph.dll tmp.def cliquer.o graph.o qpgraph.o reorder.o -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRblas -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/qpgraph.buildbin-libdir/qpgraph/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'qpgraph' as qpgraph_2.28.2.zip * DONE (qpgraph) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'qpgraph' successfully unpacked and MD5 sums checked