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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ptairMS.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ptairMS_1.2.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/ptairMS.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ptairMS/DESCRIPTION’ ... OK
* this is package ‘ptairMS’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ptairMS’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
detectPeak           136.388  3.428 139.978
alignSamples          26.024  1.168  27.231
imputeMat             24.006  1.025  25.074
annotation            21.945  0.813  22.780
writeEset             20.823  0.723  21.565
impute                20.324  0.735  21.074
getPeakList           19.858  0.683  20.558
plot                  18.251  0.597  18.919
plotRaw               17.431  0.685  18.204
plotFeatures          17.229  0.687  18.019
rmPeakList            15.790  0.577  16.409
plotTIC               15.677  0.555  16.247
plotCalib             15.138  0.544  15.703
setSampleMetadata     14.432  0.424  14.874
resetSampleMetadata   14.395  0.458  14.866
defineKnots           14.069  0.388  14.471
getFileNames          13.698  0.410  14.119
changeTimeLimits      13.670  0.406  14.094
getSampleMetadata     13.668  0.402  14.085
exportSampleMetada    13.584  0.440  14.039
importSampleMetadata  13.409  0.442  13.863
getDirectory          13.261  0.367  13.688
updatePtrSet          13.064  0.428  13.511
createPtrSet          12.377  0.469  12.873
convert_to_mzML        8.558  0.290   8.841
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.14-bioc/meat/ptairMS.Rcheck/00check.log’
for details.