############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/pRoloc_1.34.0.tar.gz && rm -rf pRoloc.buildbin-libdir && mkdir pRoloc.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pRoloc.buildbin-libdir pRoloc_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL pRoloc_1.34.0.zip && rm pRoloc_1.34.0.tar.gz pRoloc_1.34.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 42 2598k 42 1104k 0 0 1697k 0 0:00:01 --:--:-- 0:00:01 1696k 100 2598k 100 2598k 0 0 2209k 0 0:00:01 0:00:01 --:--:-- 2211k install for i386 * installing *source* package 'pRoloc' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c dmvtCpp.cpp -o dmvtCpp.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pRoloc.cpp -o pRoloc.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o pRoloc.dll tmp.def RcppExports.o dmvtCpp.o pRoloc.o -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/pRoloc.buildbin-libdir/00LOCK-pRoloc/00new/pRoloc/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'pRoloc' finding HTML links ... done AnnotationParams-class html ClustDist-class html ClustDistList-class html GenRegRes-class html finding level-2 HTML links ... done MCMCParams html MLearn-methods html MartInstance-class html QSep-class html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/pRoloc.buildbin-libdir/00LOCK-pRoloc/00new/pRoloc/help/qsep.html SpatProtVis-class html addGoAnnotations html addLegend html addMarkers html checkFeatureNamesOverlap html checkFvarOverlap html chi2-methods html classWeights html clustDist html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/pRoloc.buildbin-libdir/00LOCK-pRoloc/00new/pRoloc/help/clustDist.html defunct html empPvalues html fDataToUnknown html filterBinMSnSet html filterMaxMarkers html filterMinMarkers html filterZeroCols html getGOFromFeatures html getMarkerClasses html getMarkers html getNormDist html getPredictions html getStockcol html goIdToTerm html highlightOnPlot html knnClassification html knnOptimisation html knntlClassification html knntlOptimisation html ksvmClassification html ksvmOptimisation html makeGoSet html markerMSnSet html markers html mcmc-helpers html minMarkers html mixing_posterior_check html move2Ds html mrkConsProfiles html mrkHClust html nbClassification html nbOptimisation html nicheMeans2D html nndist-methods html nnetClassification html nnetOptimisation html orderGoAnnotations html orgQuants html pRolocmarkers html perTurboClassification html perTurboOptimisation html phenoDisco html plot2D html plot2Ds html plotConsProfiles html plotDist html plotEllipse html plsdaClassification html plsdaOptimisation html rfClassification html rfOptimisation html sampleMSnSet html showGOEvidenceCodes html spatial2D html subsetMarkers html svmClassification html svmOptimisation html tagm-map html tagm-mcmc html testMSnSet html testMarkers html thetas html undocumented html zerosInBinMSnSet html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'pRoloc' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c dmvtCpp.cpp -o dmvtCpp.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pRoloc.cpp -o pRoloc.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o pRoloc.dll tmp.def RcppExports.o dmvtCpp.o pRoloc.o -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/pRoloc.buildbin-libdir/pRoloc/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'pRoloc' as pRoloc_1.34.0.zip * DONE (pRoloc) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'pRoloc' successfully unpacked and MD5 sums checked